Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0622
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012669-1|AAT08475.1|   46|Drosophila melanogaster LD48059p pro...    61   1e-09
L77907-1|AAC37264.1| 1883|Drosophila melanogaster chromodomain-h...    29   8.9  
BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p pro...    29   8.9  
AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p pro...    29   8.9  
AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA ...    29   8.9  

>BT012669-1|AAT08475.1|   46|Drosophila melanogaster LD48059p
           protein.
          Length = 46

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 28/38 (73%), Positives = 31/38 (81%)
 Frame = +3

Query: 168 EHKCWDPKDGELCLVRSXSGETLMEDRSDSDVQIDRRN 281
           EH C DPKDGEL L+R  SGETLMEDR+ SDVQID +N
Sbjct: 9   EHICCDPKDGELYLIRLKSGETLMEDRNSSDVQIDCQN 46


>L77907-1|AAC37264.1| 1883|Drosophila melanogaster
           chromodomain-helicase-DNA-bindingprotein protein.
          Length = 1883

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 201 VHHLSGPSICAQSAPSFTDWKRD 133
           +HHL GP +C     + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595


>BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p
           protein.
          Length = 1645

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 201 VHHLSGPSICAQSAPSFTDWKRD 133
           +HHL GP +C     + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595


>AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p
           protein.
          Length = 1101

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 201 VHHLSGPSICAQSAPSFTDWKRD 133
           +HHL GP +C     + T W+R+
Sbjct: 41  IHHLYGPFLCVVPLSTMTAWQRE 63


>AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA
           protein.
          Length = 1883

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 201 VHHLSGPSICAQSAPSFTDWKRD 133
           +HHL GP +C     + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,296,296
Number of Sequences: 53049
Number of extensions: 627140
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)