Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0622
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    29   4.4  
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr...    28   7.6  
At2g38320.1 68415.m04708 expressed protein                             28   7.6  

>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
            similar to GI:11993492; RNA binding protein - Homo
            sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
            carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 201  LCLVRSXSGETLMEDRSDSDVQIDRRNWV*GRKTN 305
            +C VR       M + SDS  ++DRR     R+TN
Sbjct: 928  VCFVRGKEAPKAMLEASDSSFEVDRRTSKRSRRTN 962


>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 366

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 332 RSFPQDSWRRYKILKQSHPVKRMIRGIGAETTSTYSQTLNGXELRLTRT 478
           R +PQ+  R + + ++SH V   +    + T  +++   +G  L+  RT
Sbjct: 83  RGYPQEMDRWFAVQEESHRVGHSVTASASGTNMSWASFESGRSLKTART 131


>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 406 RHWGRNDLNLFSNFKWXRTP 465
           RHW  +D+ +F+++ W R P
Sbjct: 215 RHWTNSDIIVFNSYLWWRMP 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,804
Number of Sequences: 28952
Number of extensions: 301677
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)