BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0622 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 29 4.4 At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 28 7.6 At2g38320.1 68415.m04708 expressed protein 28 7.6 >At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) similar to GI:11993492; RNA binding protein - Homo sapiens, EMBL:AB016089 (N-terminus), several ubiquitin carboxyl-terminal hydrolases from aa pos. 712 Length = 1067 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 201 LCLVRSXSGETLMEDRSDSDVQIDRRNWV*GRKTN 305 +C VR M + SDS ++DRR R+TN Sbjct: 928 VCFVRGKEAPKAMLEASDSSFEVDRRTSKRSRRTN 962 >At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 366 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = +2 Query: 332 RSFPQDSWRRYKILKQSHPVKRMIRGIGAETTSTYSQTLNGXELRLTRT 478 R +PQ+ R + + ++SH V + + T +++ +G L+ RT Sbjct: 83 RGYPQEMDRWFAVQEESHRVGHSVTASASGTNMSWASFESGRSLKTART 131 >At2g38320.1 68415.m04708 expressed protein Length = 410 Score = 27.9 bits (59), Expect = 7.6 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +1 Query: 406 RHWGRNDLNLFSNFKWXRTP 465 RHW +D+ +F+++ W R P Sbjct: 215 RHWTNSDIIVFNSYLWWRMP 234 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,112,804 Number of Sequences: 28952 Number of extensions: 301677 Number of successful extensions: 513 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 513 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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