Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0621
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 65 4e-11
11_04_0234 + 15187065-15188241,15188316-15188494 58 6e-09
01_03_0028 - 11783122-11783381,11783668-11784163 31 1.1
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 30 1.4
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 29 4.2
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 29 4.2
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 7.4
09_02_0298 - 7061908-7061913,7061952-7062032,7062363-7062564,706... 28 7.4
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 28 7.4
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 27 9.8
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 65.3 bits (152), Expect = 4e-11
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 6/192 (3%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184
+ V ++ FDGLD+ W +P +A F + V E + A RG+ LTA V
Sbjct: 150 AAVKVARENGFDGLDVAWRFPASAVEMAEFG------FLVAEWRAAV---PRGFLLTATV 200
Query: 185 PLANFRL---MEGYHVPE--LCQELDAIHVMSYDLRGNWAGFADVHSPLYKRP-HDQWAY 346
+N G P + + LD ++VM++ LR G A+ ++ + P +D+ ++
Sbjct: 201 YFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRP--PGAANANATAFDAPLYDRASH 258
Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526
+ + G+ W + G P +K+V+GIP YGRS+ L N G+G + G
Sbjct: 259 --YSASYGVVSWLDAGVPASKVVMGIPLYGRSWFL-RNKANSGVGAPV---VAAGPKQRG 312
Query: 527 TNATGFWAYYEI 562
+NATG +Y E+
Sbjct: 313 SNATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 58.0 bits (134), Expect = 6e-09
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 6/192 (3%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184
S ++ + FDGLDL W +P + D + + ++ + R LTA V
Sbjct: 145 SSIELARANGFDGLDLAWRFPATQLDMENLGDL-LAEWRAEIMEDSTTRSTEPLLLTATV 203
Query: 185 PLAN--FRLME---GYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLY-KRPHDQWAY 346
+N F + + Y + ++ LD ++++++ L N + +PLY K H +Y
Sbjct: 204 YFSNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLHKN-SNVTTADAPLYDKDSHFSASY 262
Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526
G+ W + G P KLV+GIP +GRS+ L + N GLG A G
Sbjct: 263 -------GVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKN-GLGA---PTAAAGTKQRK 311
Query: 527 TNATGFWAYYEI 562
+N G AY EI
Sbjct: 312 SNQIGVIAYAEI 323
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 FLKKYD-FDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIR 151
F+ K++ DG D DW++P AD F D D + V+ L + R
Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 207 ISLKLASGTAAVSSHPLSXLMNALFNSWTKYKXSSLSEKEPPRSA 73
+SLK A+ ++ L L A+FN+ +KYK SS + R+A
Sbjct: 483 LSLKRANEIIGATTEELDLLYYAMFNACSKYKCSSSYQLSKKRAA 527
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 430 LWTFIHFICWKQQLWPWNLHQQRGWWWXPCSLYKRNWILGLL*NLH 567
L TF+ +IC K L W L Q+R ++ L W+ GL LH
Sbjct: 477 LHTFMRYICHKSWLGGWFLPQKRSYF--ALKLPNGWWVFGLDQALH 520
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.7 bits (61), Expect = 4.2
Identities = 27/102 (26%), Positives = 39/102 (38%)
Frame = -3
Query: 363 FTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIASSS*HSSGTWYPSISLKLASG 184
FT+ F A WS G +YK A P ++ + + + W K
Sbjct: 630 FTVGFILAVWSSGAIYKQCALCANLCGGPV-AHSLEHLVALV---VWWWKKRAMTKQTDR 685
Query: 183 TAAVSSHPLSXLMNALFNSWTKYKXSSLSEKEPPRSAAPGYS 58
T SS PL N S T ++S PP S++P Y+
Sbjct: 686 TGHPSSDPLIADCNICLKSATSGTLDTISPSSPPPSSSPPYN 727
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 223 YMV--SLHQPEISKRYGSSQLPSSIGSDERPL*LLDE 119
YM+ SLH+P +S Y +LP+ + D+ L +D+
Sbjct: 144 YMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQ 180
>09_02_0298 -
7061908-7061913,7061952-7062032,7062363-7062564,
7062665-7062890,7063030-7063143,7063213-7063270
Length = 228
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 324 RLYKGECTSAKPAQLPRRSYDITWIASS 241
RL KG C+ LP S +I W+ S
Sbjct: 32 RLLKGRCSLRSGGSLPSSSMEIQWVGGS 59
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 414 TSLFVGQPFSSHKLRPSFTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIA 247
++L G PF +H++R SFS H G G CT++ R+ + W A
Sbjct: 295 STLDFGDPFRAHEMRCRLVASFS-WHKFVGCFLLGSCTNSGNLSRYRQKPPLPWSA 349
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 332 DQWAYEKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNN 466
D W + NVND ++ E PT+ L + F +++GN+
Sbjct: 451 DNWDEGQDNVNDNVDFLPEIPQPTDVLQINSSFASSILAVNSGNS 495
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,174
Number of Sequences: 37544
Number of extensions: 395147
Number of successful extensions: 1052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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