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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0621
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       65   4e-11
11_04_0234 + 15187065-15188241,15188316-15188494                       58   6e-09
01_03_0028 - 11783122-11783381,11783668-11784163                       31   1.1  
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738...    30   1.4  
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187...    29   4.2  
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325...    29   4.2  
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536...    28   7.4  
09_02_0298 - 7061908-7061913,7061952-7062032,7062363-7062564,706...    28   7.4  
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435...    28   7.4  
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571     27   9.8  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 6/192 (3%)
 Frame = +2

Query: 5   SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184
           + V   ++  FDGLD+ W +P +A     F       + V E + A     RG+ LTA V
Sbjct: 150 AAVKVARENGFDGLDVAWRFPASAVEMAEFG------FLVAEWRAAV---PRGFLLTATV 200

Query: 185 PLANFRL---MEGYHVPE--LCQELDAIHVMSYDLRGNWAGFADVHSPLYKRP-HDQWAY 346
             +N        G   P   + + LD ++VM++ LR    G A+ ++  +  P +D+ ++
Sbjct: 201 YFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRP--PGAANANATAFDAPLYDRASH 258

Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526
              + + G+  W + G P +K+V+GIP YGRS+ L     N G+G  +      G     
Sbjct: 259 --YSASYGVVSWLDAGVPASKVVMGIPLYGRSWFL-RNKANSGVGAPV---VAAGPKQRG 312

Query: 527 TNATGFWAYYEI 562
           +NATG  +Y E+
Sbjct: 313 SNATGAMSYAEV 324


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 6/192 (3%)
 Frame = +2

Query: 5   SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184
           S ++  +   FDGLDL W +P       +  D     +  + ++ +  R      LTA V
Sbjct: 145 SSIELARANGFDGLDLAWRFPATQLDMENLGDL-LAEWRAEIMEDSTTRSTEPLLLTATV 203

Query: 185 PLAN--FRLME---GYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLY-KRPHDQWAY 346
             +N  F + +    Y + ++   LD ++++++ L  N +      +PLY K  H   +Y
Sbjct: 204 YFSNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLHKN-SNVTTADAPLYDKDSHFSASY 262

Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526
                  G+  W + G P  KLV+GIP +GRS+ L   + N GLG      A  G     
Sbjct: 263 -------GVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKN-GLGA---PTAAAGTKQRK 311

Query: 527 TNATGFWAYYEI 562
           +N  G  AY EI
Sbjct: 312 SNQIGVIAYAEI 323


>01_03_0028 - 11783122-11783381,11783668-11784163
          Length = 251

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 17  FLKKYD-FDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIR 151
           F+ K++  DG D DW++P  AD    F D D  +  V+ L +   R
Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232


>01_07_0053 +
           40772966-40773080,40773484-40773578,40773730-40773843,
           40773984-40774088,40774179-40774250,40774293-40774346,
           40774507-40774619,40774705-40774839,40774941-40775009,
           40775140-40775227,40775327-40775398,40775476-40775576,
           40775836-40775953,40776054-40776113,40776206-40776316,
           40776499-40776573,40776821-40776854,40777453-40777805,
           40778154-40778222,40778526-40778762
          Length = 729

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 207 ISLKLASGTAAVSSHPLSXLMNALFNSWTKYKXSSLSEKEPPRSA 73
           +SLK A+     ++  L  L  A+FN+ +KYK SS  +    R+A
Sbjct: 483 LSLKRANEIIGATTEELDLLYYAMFNACSKYKCSSSYQLSKKRAA 527


>07_01_0251 +
           1874148-1874311,1874367-1874429,1874484-1874709,
           1874830-1875081,1875158-1875267,1875720-1875815,
           1875898-1875985,1876246-1876475,1876745-1876929,
           1877136-1877335,1877592-1877924,1878058-1878159,
           1878869-1879166,1879626-1879774,1879859-1880143,
           1880531-1880728
          Length = 992

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 430 LWTFIHFICWKQQLWPWNLHQQRGWWWXPCSLYKRNWILGLL*NLH 567
           L TF+ +IC K  L  W L Q+R ++     L    W+ GL   LH
Sbjct: 477 LHTFMRYICHKSWLGGWFLPQKRSYF--ALKLPNGWWVFGLDQALH 520


>01_01_0429 +
           3254291-3254435,3254902-3255210,3255286-3256747,
           3256950-3257577
          Length = 847

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 27/102 (26%), Positives = 39/102 (38%)
 Frame = -3

Query: 363 FTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIASSS*HSSGTWYPSISLKLASG 184
           FT+ F  A WS G +YK     A     P  ++ +  + +        W      K    
Sbjct: 630 FTVGFILAVWSSGAIYKQCALCANLCGGPV-AHSLEHLVALV---VWWWKKRAMTKQTDR 685

Query: 183 TAAVSSHPLSXLMNALFNSWTKYKXSSLSEKEPPRSAAPGYS 58
           T   SS PL    N    S T     ++S   PP S++P Y+
Sbjct: 686 TGHPSSDPLIADCNICLKSATSGTLDTISPSSPPPSSSPPYN 727


>11_06_0762 +
           27043460-27044319,27052096-27052912,27052992-27053649,
           27053698-27053934,27054091-27054161,27054346-27054441
          Length = 912

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 223 YMV--SLHQPEISKRYGSSQLPSSIGSDERPL*LLDE 119
           YM+  SLH+P +S  Y   +LP+ +  D+  L  +D+
Sbjct: 144 YMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQ 180


>09_02_0298 -
           7061908-7061913,7061952-7062032,7062363-7062564,
           7062665-7062890,7063030-7063143,7063213-7063270
          Length = 228

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 324 RLYKGECTSAKPAQLPRRSYDITWIASS 241
           RL KG C+      LP  S +I W+  S
Sbjct: 32  RLLKGRCSLRSGGSLPSSSMEIQWVGGS 59


>02_05_0681 +
           30842038-30842301,30843067-30843300,30843409-30843578,
           30844130-30844474,30844475-30844661,30844747-30844798,
           30844843-30845108,30845302-30845400,30845577-30846292,
           30846616-30847098,30847288-30847546
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 414 TSLFVGQPFSSHKLRPSFTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIA 247
           ++L  G PF +H++R     SFS  H   G    G CT++      R+   + W A
Sbjct: 295 STLDFGDPFRAHEMRCRLVASFS-WHKFVGCFLLGSCTNSGNLSRYRQKPPLPWSA 349


>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
          Length = 740

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 332 DQWAYEKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNN 466
           D W   + NVND ++   E   PT+ L +   F      +++GN+
Sbjct: 451 DNWDEGQDNVNDNVDFLPEIPQPTDVLQINSSFASSILAVNSGNS 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,174
Number of Sequences: 37544
Number of extensions: 395147
Number of successful extensions: 1052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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