BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0621 (650 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0649 - 18402976-18403220,18403305-18404499 65 4e-11 11_04_0234 + 15187065-15188241,15188316-15188494 58 6e-09 01_03_0028 - 11783122-11783381,11783668-11784163 31 1.1 01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 30 1.4 07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 29 4.2 01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 29 4.2 11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 7.4 09_02_0298 - 7061908-7061913,7061952-7062032,7062363-7062564,706... 28 7.4 02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 28 7.4 04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 27 9.8 >04_03_0649 - 18402976-18403220,18403305-18404499 Length = 479 Score = 65.3 bits (152), Expect = 4e-11 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 6/192 (3%) Frame = +2 Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184 + V ++ FDGLD+ W +P +A F + V E + A RG+ LTA V Sbjct: 150 AAVKVARENGFDGLDVAWRFPASAVEMAEFG------FLVAEWRAAV---PRGFLLTATV 200 Query: 185 PLANFRL---MEGYHVPE--LCQELDAIHVMSYDLRGNWAGFADVHSPLYKRP-HDQWAY 346 +N G P + + LD ++VM++ LR G A+ ++ + P +D+ ++ Sbjct: 201 YFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRP--PGAANANATAFDAPLYDRASH 258 Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526 + + G+ W + G P +K+V+GIP YGRS+ L N G+G + G Sbjct: 259 --YSASYGVVSWLDAGVPASKVVMGIPLYGRSWFL-RNKANSGVGAPV---VAAGPKQRG 312 Query: 527 TNATGFWAYYEI 562 +NATG +Y E+ Sbjct: 313 SNATGAMSYAEV 324 >11_04_0234 + 15187065-15188241,15188316-15188494 Length = 451 Score = 58.0 bits (134), Expect = 6e-09 Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Frame = +2 Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184 S ++ + FDGLDL W +P + D + + ++ + R LTA V Sbjct: 145 SSIELARANGFDGLDLAWRFPATQLDMENLGDL-LAEWRAEIMEDSTTRSTEPLLLTATV 203 Query: 185 PLAN--FRLME---GYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLY-KRPHDQWAY 346 +N F + + Y + ++ LD ++++++ L N + +PLY K H +Y Sbjct: 204 YFSNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLHKN-SNVTTADAPLYDKDSHFSASY 262 Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526 G+ W + G P KLV+GIP +GRS+ L + N GLG A G Sbjct: 263 -------GVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKN-GLGA---PTAAAGTKQRK 311 Query: 527 TNATGFWAYYEI 562 +N G AY EI Sbjct: 312 SNQIGVIAYAEI 323 >01_03_0028 - 11783122-11783381,11783668-11784163 Length = 251 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 17 FLKKYD-FDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIR 151 F+ K++ DG D DW++P AD F D D + V+ L + R Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232 >01_07_0053 + 40772966-40773080,40773484-40773578,40773730-40773843, 40773984-40774088,40774179-40774250,40774293-40774346, 40774507-40774619,40774705-40774839,40774941-40775009, 40775140-40775227,40775327-40775398,40775476-40775576, 40775836-40775953,40776054-40776113,40776206-40776316, 40776499-40776573,40776821-40776854,40777453-40777805, 40778154-40778222,40778526-40778762 Length = 729 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -3 Query: 207 ISLKLASGTAAVSSHPLSXLMNALFNSWTKYKXSSLSEKEPPRSA 73 +SLK A+ ++ L L A+FN+ +KYK SS + R+A Sbjct: 483 LSLKRANEIIGATTEELDLLYYAMFNACSKYKCSSSYQLSKKRAA 527 >07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709, 1874830-1875081,1875158-1875267,1875720-1875815, 1875898-1875985,1876246-1876475,1876745-1876929, 1877136-1877335,1877592-1877924,1878058-1878159, 1878869-1879166,1879626-1879774,1879859-1880143, 1880531-1880728 Length = 992 Score = 28.7 bits (61), Expect = 4.2 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +1 Query: 430 LWTFIHFICWKQQLWPWNLHQQRGWWWXPCSLYKRNWILGLL*NLH 567 L TF+ +IC K L W L Q+R ++ L W+ GL LH Sbjct: 477 LHTFMRYICHKSWLGGWFLPQKRSYF--ALKLPNGWWVFGLDQALH 520 >01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747, 3256950-3257577 Length = 847 Score = 28.7 bits (61), Expect = 4.2 Identities = 27/102 (26%), Positives = 39/102 (38%) Frame = -3 Query: 363 FTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIASSS*HSSGTWYPSISLKLASG 184 FT+ F A WS G +YK A P ++ + + + W K Sbjct: 630 FTVGFILAVWSSGAIYKQCALCANLCGGPV-AHSLEHLVALV---VWWWKKRAMTKQTDR 685 Query: 183 TAAVSSHPLSXLMNALFNSWTKYKXSSLSEKEPPRSAAPGYS 58 T SS PL N S T ++S PP S++P Y+ Sbjct: 686 TGHPSSDPLIADCNICLKSATSGTLDTISPSSPPPSSSPPYN 727 >11_06_0762 + 27043460-27044319,27052096-27052912,27052992-27053649, 27053698-27053934,27054091-27054161,27054346-27054441 Length = 912 Score = 27.9 bits (59), Expect = 7.4 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -2 Query: 223 YMV--SLHQPEISKRYGSSQLPSSIGSDERPL*LLDE 119 YM+ SLH+P +S Y +LP+ + D+ L +D+ Sbjct: 144 YMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQ 180 >09_02_0298 - 7061908-7061913,7061952-7062032,7062363-7062564, 7062665-7062890,7063030-7063143,7063213-7063270 Length = 228 Score = 27.9 bits (59), Expect = 7.4 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = -3 Query: 324 RLYKGECTSAKPAQLPRRSYDITWIASS 241 RL KG C+ LP S +I W+ S Sbjct: 32 RLLKGRCSLRSGGSLPSSSMEIQWVGGS 59 >02_05_0681 + 30842038-30842301,30843067-30843300,30843409-30843578, 30844130-30844474,30844475-30844661,30844747-30844798, 30844843-30845108,30845302-30845400,30845577-30846292, 30846616-30847098,30847288-30847546 Length = 1024 Score = 27.9 bits (59), Expect = 7.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 414 TSLFVGQPFSSHKLRPSFTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIA 247 ++L G PF +H++R SFS H G G CT++ R+ + W A Sbjct: 295 STLDFGDPFRAHEMRCRLVASFS-WHKFVGCFLLGSCTNSGNLSRYRQKPPLPWSA 349 >04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 Length = 740 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +2 Query: 332 DQWAYEKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNN 466 D W + NVND ++ E PT+ L + F +++GN+ Sbjct: 451 DNWDEGQDNVNDNVDFLPEIPQPTDVLQINSSFASSILAVNSGNS 495 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,809,174 Number of Sequences: 37544 Number of extensions: 395147 Number of successful extensions: 1052 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1025 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1050 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1620349964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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