Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0621
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 9e-30
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 108 3e-24
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 107 6e-24
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 5e-22
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 76 3e-14
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 50 1e-06
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 33 0.15
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 127 bits (306), Expect = 9e-30
Identities = 76/188 (40%), Positives = 95/188 (50%), Gaps = 5/188 (2%)
Frame = +2
Query: 17 FLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWE-----LTAA 181
FL+ + FDGLDLDWEYPGA RG DK F QEL AF LTAA
Sbjct: 126 FLRNHMFDGLDLDWEYPGA--RGSPPEDKHRFTLLCQELLAAFETEAANTGKPRLLLTAA 183
Query: 182 VPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNV 361
V + GY + L Q LD I++MSYDL G+W H+ + D + L V
Sbjct: 184 VSAGETTVKNGYEISALGQALDWINLMSYDLHGDWEDTTGHHAAM-----DSSTGDPLTV 238
Query: 362 NDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPYTNATG 541
++LW G P+NK+ +GIP YGRSFTL N ++ A G PYT G
Sbjct: 239 THAVDLWIAGGMPSNKIALGIPLYGRSFTLKTANKT------LDAPATKGGQGPYTKEAG 292
Query: 542 FWAYYEIC 565
+ AY+EIC
Sbjct: 293 YIAYFEIC 300
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 108 bits (260), Expect = 3e-24
Identities = 91/230 (39%), Positives = 115/230 (50%), Gaps = 17/230 (7%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGS-FSDKDXFLYFVQELKRAF--IRXDRGWE-- 169
S ++ L+ FDGLDLDWEYPG RGGS SDK F QEL+ AF D G E
Sbjct: 510 SAIETLRTNGFDGLDLDWEYPGM--RGGSPKSDKGRFTLLCQELRDAFEAEAKDSGKERL 567
Query: 170 -LTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPL------YKRP 328
LTAAV + + + Y + + + LD I+VM+YDL G W H+ + P
Sbjct: 568 LLTAAVAAGLWTIKDAYDIEGISKPLDWINVMTYDLHGTWEPKTGHHTAMGPDGDKLTLP 627
Query: 329 HDQWAYEKLNVNDGLNLWEE----XGCPTNKLVVGIPFYGRSFTL-SAGNNNYGLGTYIN 493
W + +N D WE+ G P NK+V+G+ YGR+F L SAGNN GL
Sbjct: 628 FAIWYW--MNNRD---TWEKPGIRNGMPANKIVLGLGTYGRAFGLESAGNN--GL----- 675
Query: 494 KEAGGGXPAPYTNATGFWAYYEICTEVDADGSGWTKKWDEFRKCPYAYKG 643
+AG YT A GF AY+EIC G T + K PY YKG
Sbjct: 676 -DAG-----KYTGAKGFLAYFEICK------MGLTVVENNKAKAPYGYKG 713
Score = 81.4 bits (192), Expect = 6e-16
Identities = 76/229 (33%), Positives = 102/229 (44%), Gaps = 16/229 (6%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGS-FSDKDXFLYFVQELKRAFIRXDR--GWE-- 169
S ++ L+ + FDGLDLDWEYPG RGGS SDK F +EL+ AF + G E
Sbjct: 125 SAIETLRTHGFDGLDLDWEYPGM--RGGSPKSDKGRFTLLCRELREAFEAEAKASGKERM 182
Query: 170 -LTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPL------YKRP 328
LTAAV + + Y + ++ + LD I++M+YDL G W H+ + P
Sbjct: 183 LLTAAVAAGLWTIKGAYDIADIAEPLDWINLMTYDLHGTWEYKTGHHTAMGPDGDKLTLP 242
Query: 329 HDQWAYEKLNVNDGLNLWEE----XGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINK 496
W + +N D WE+ G P NK+V+ P +G + K
Sbjct: 243 FAIWYW--MNNRD---TWEKPGIRKGMPANKIVLAWPL---------------MGVHSGK 282
Query: 497 EAGGGXPAPYTNATGFWAYYEICTEVDADGSGWTKKWDEFRKCPYAYKG 643
YT+A GF AYYEIC G T PY YKG
Sbjct: 283 ---------YTDAEGFLAYYEICKR------GLTVVHKNKANAPYGYKG 316
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 107 bits (258), Expect = 6e-24
Identities = 74/193 (38%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSF-SDKDXFLYFVQELKRAF----IRXDRG-W 166
S + L++++FDG DLDWEYPG +R GS DK F QEL AF + +R
Sbjct: 234 SSIAMLRQWNFDGFDLDWEYPG--NRVGSDPGDKQRFTILCQELLDAFKLEAAQTNRPRL 291
Query: 167 ELTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAY 346
LTAAV + + Y V ++ Q LD I++M+YDLRG W H+ L P
Sbjct: 292 LLTAAVAAGKATIDKAYEVDKIGQILDLINLMAYDLRGMWEPETGHHTALEGPPG----- 346
Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526
E+L V+ W + G P +K+ +G+ YGR+F L A +GL N G Y
Sbjct: 347 EELTVSFAAQYWIDKGAPASKIALGLGTYGRAFKL-ADQTRHGLKAPAN---GNPTRGQY 402
Query: 527 TNATGFWAYYEIC 565
T GF AYYEIC
Sbjct: 403 TREPGFLAYYEIC 415
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 101 bits (242), Expect = 5e-22
Identities = 78/221 (35%), Positives = 99/221 (44%), Gaps = 6/221 (2%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSF-SDKDXFLYFVQELKRAFIRXDRGWE---- 169
S++ KYDFDG DLDWEYP A RG S DK F +E+ AF R +
Sbjct: 503 SLLQLSDKYDFDGFDLDWEYP--ASRGNSPPQDKQHFTILCEEMLDAFKRKAADTDKPRM 560
Query: 170 -LTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAY 346
LTAAV + + Y V +L LD I++M+YDL G W + H+ L P D
Sbjct: 561 LLTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLHGPWEPYTGHHTALVGPPGD---- 616
Query: 347 EKLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGXPAPY 526
KL V+ + W E G P K+ +G+ YG +F LS LG N G P
Sbjct: 617 -KLTVSYAVKYWMEKGMPCGKIALGMANYGHAFELSDPTKT-ALGAPANVNKGRSYP--- 671
Query: 527 TNATGFWAYYEICTEVDADGSGWTKKWDEFRKCPYAYKGTQ 649
YYE+C TK D K PY Y G+Q
Sbjct: 672 --------YYELCK------LPLTKVTDNPAKAPYGYHGSQ 698
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 75.8 bits (178), Expect = 3e-14
Identities = 45/105 (42%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Frame = +2
Query: 17 FLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWE-----LTAA 181
FL+ + FDGLDLDWEYPGA RG DK F QEL AF LTAA
Sbjct: 50 FLRNHMFDGLDLDWEYPGA--RGSPPEDKHRFTLLCQELLAAFETEAANTGKPRLLLTAA 107
Query: 182 VPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPL 316
V + GY + L Q LD I++MSYDL G+W H+ +
Sbjct: 108 VSAGETTVKNGYEISALGQALDWINLMSYDLHGDWEDTTGHHAAM 152
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGS-FSDKDXFLYFVQELKRAFI 148
SV+ L+ + FDGLDLDWEYP A RGGS DK F QEL FI
Sbjct: 122 SVIRILRTWGFDGLDLDWEYP--ATRGGSPPEDKQRFTVLCQELMNTFI 168
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 488 INKEAGGGXP-APYTNATGFWAYYEICTEVDADGSGWTKKWDEFR-KCPYAY 637
I A G P PYT +GF +YYEIC D T K D+ + PY Y
Sbjct: 5 IGAPANGNPPRGPYTRESGFLSYYEIC---DMMPKMKTMKTDQSEVRAPYGY 53
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 430 LW--TFIHFICWKQQLWPWNLHQQRGWWWXPCSLYKRN 537
LW + + + W + LWPW+L + W P SL+ R+
Sbjct: 1630 LWPRSLLPWSLWPRSLWPWSLWSRSMW---PRSLWPRS 1664
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,718,994
Number of Sequences: 59808
Number of extensions: 420051
Number of successful extensions: 952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -