Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0621
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 61 5e-10
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 61 7e-10
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 60 9e-10
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 60 2e-09
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 56 2e-08
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 46 3e-05
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 44 1e-04
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 42 3e-04
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 42 5e-04
At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein ... 29 2.0
At1g78770.1 68414.m09180 cell division cycle family protein simi... 29 2.7
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family... 28 6.2
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family... 27 8.2
At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote... 27 8.2
At2g04840.1 68415.m00497 F-box family protein similar to F-box p... 27 8.2
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 61.3 bits (142), Expect = 5e-10
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 7/167 (4%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFI-RXDRGWE---- 169
S +D +K DF GLDL WEYP + + F ++E + A + D+ +
Sbjct: 118 SSIDIARKKDFYGLDLAWEYP------SNDVEMTNFGKLLEEWRAAVVEESDKTNQLPLL 171
Query: 170 LTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYE 349
LTAAV + Y V + LD +++M+YD G G++ V P HD
Sbjct: 172 LTAAVYYSPQYDGVEYPVKAIADNLDFVNIMAYDFYG--PGWSPVTGPPAALFHDPSNPA 229
Query: 350 KLNVNDGLNLW-EEXGCPTNKLVVGIPFYGRSFTL-SAGNNNYGLGT 484
+ N GL W +E P K V+G P+ G ++TL A NN Y T
Sbjct: 230 GRSGNSGLRKWLDEAKLPPKKAVLGFPYCGWAWTLEDAENNGYDAAT 276
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 60.9 bits (141), Expect = 7e-10
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 3/217 (1%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSD-KDXFLYFVQELKRAFIRXDRGWELTAA 181
S + + Y F GLDLDWEYP + F + + V+ + LTAA
Sbjct: 101 STITVARSYGFHGLDLDWEYPRNEEEMYDFGKLLEEWRSAVEAESNS--SGTTALILTAA 158
Query: 182 VPLANFRLMEGYHVPELCQELDAIHVMSYDLRG-NWAGFADVHSPLYKRPHDQWAYEKLN 358
V ++ Y V + LD I++M+YD G W+ + LY P D +
Sbjct: 159 VYYSSNYQGVPYPVLAISNSLDWINLMAYDFYGPGWSTVTGPPASLY-LPTD-----GRS 212
Query: 359 VNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGN-NNYGLGTYINKEAGGGXPAPYTNA 535
+ G+ W E G P K V+G P+YG ++TL+ + N Y T P +
Sbjct: 213 GDSGVRDWTEAGLPAKKAVLGFPYYGWAWTLADPDVNGYDANT----------TGPAISD 262
Query: 536 TGFWAYYEICTEVDADGSGWTKKWDEFRKCPYAYKGT 646
G +Y ++ T + +G+ TK D+ Y Y GT
Sbjct: 263 DGEISYRQLQTWIVDNGA--TKVHDDMMVGDYCYAGT 297
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 60.5 bits (140), Expect = 9e-10
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSD--KDXFLYFVQELKRAFIRXDRGWELTA 178
S +D +K DF GLDL WEYP +F K+ V+E R LTA
Sbjct: 110 SSIDIARKKDFYGLDLAWEYPSNDVEMANFGKLVKEWRAAVVEESDRT---NQLPLLLTA 166
Query: 179 AVPLANFRLMEGYHVPELCQELDAIHVMSYDLRG-NWAGFADVHSPLYKRPHDQWAYEKL 355
AV + E Y V + LD +++M+YD G W+ + L+ D
Sbjct: 167 AVYYSPDYYGEEYPVQAIADNLDFVNIMAYDFYGPGWSPVTGPPAALF----DPSNPAGR 222
Query: 356 NVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTL-SAGNNNYGLGT 484
+ + GL+ W E P K V+G + G ++TL A NN Y T
Sbjct: 223 SGDSGLSKWLEAKLPAKKAVLGFSYCGWAWTLEDAENNGYDAAT 266
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 59.7 bits (138), Expect = 2e-09
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSD-KDXFLYFVQELKRAFIRXDRGWELTAA 181
S + + Y FDGLDLDWEYP A F++ + Y VQ A+ LTA
Sbjct: 14 STISIARSYGFDGLDLDWEYPRNAAEMSDFAELLKEWRYAVQ--GEAYSSELPVLILTAT 71
Query: 182 VPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNV 361
V ++ Y V + + LD +++ +YD G G +V P P +
Sbjct: 72 VYYSSNYNGVVYPVKFISELLDWVNIKAYDFYG--PGCTEVTGP----PAALYLQSDGPS 125
Query: 362 ND-GLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNN 469
D G+ W + G P K V+G P+YG ++TL+ N+
Sbjct: 126 GDSGVKDWIDAGLPAEKAVLGFPYYGWAWTLADPKNH 162
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 56.0 bits (129), Expect = 2e-08
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSD--KDXFLYFVQELKRAFIRXDRGWELTA 178
S + + Y F GLDLDWEYP +A +F ++ V E + L A
Sbjct: 122 SSIRVARSYGFHGLDLDWEYPSSATEMTNFGTLLREWRSAVVAEASSS---GKPRLLLAA 178
Query: 179 AVPLANFRLMEGYHVPELCQELDAIHVMSYDLRG-NWAGFADVHSPLYKRPHDQWAYEKL 355
AV +N Y V + LD +++M+YD G W+ + L+ P +
Sbjct: 179 AVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFD-PSNAGP---- 233
Query: 356 NVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNNN 469
+ + G W + G P K V+G P+YG ++ L+ N++
Sbjct: 234 SGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSH 271
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 45.6 bits (103), Expect = 3e-05
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDR-GWELTAA 181
S + + Y FDGLDL W+YP +F + + ++ R +R LTAA
Sbjct: 111 SAISSARYYRFDGLDLVWKYPKDDVEMRNFGQ--LLEQWREAIEDDAERTERMPLLLTAA 168
Query: 182 VPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNV 361
V + Y + E+ ++LD +++++YD + + L+ + +
Sbjct: 169 VYYSPVYDSVSYPIREIKKKLDWVNLIAYDFYSSSTTIGPP-AALFDPSNPKGPCGDY-- 225
Query: 362 NDGLNLWEEXGCPTNKLVVGIPFYGRSFTLSAGNN 466
GL W + G P K V+G P+ G +++L +GN+
Sbjct: 226 --GLKEWIKAGLPAKKAVLGFPYVGWTWSLGSGND 258
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 43.6 bits (98), Expect = 1e-04
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 2/158 (1%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWELTAAV 184
S + + F GLDL+W+YP +F E + R LTAAV
Sbjct: 120 SSIKLARSCGFHGLDLNWKYPSITTEMDNFGKLLREWRLAVEAEARSSGKPR-LLLTAAV 178
Query: 185 PLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVH-SPLYKRPHDQWAYEKLNV 361
+ + V + LD +++++YD + + +PLY P +
Sbjct: 179 FYSYSYYSVLHPVNAVADSLDWVNLVAYDFYESGSSRVTCSPAPLYD-PITTGP----SG 233
Query: 362 NDGLNLWEEXGCPTNKLVVGIPFYGRSFTLS-AGNNNY 472
+ G+ W + G P K V+G P YG ++ L+ A N+NY
Sbjct: 234 DAGVRAWTQAGLPAKKAVLGFPLYGYAWCLTDAKNHNY 271
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 42.3 bits (95), Expect = 3e-04
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Frame = +2
Query: 5 SVVDFLKKYDFDGLDLDWEYPGAADRGGSFSD--KDXFLYFVQELKRAFIRXDRGWELTA 178
S + + F GLDL WEYP +F ++ E +R IR LTA
Sbjct: 92 SSISIARSLGFYGLDLAWEYPNNDVEMNNFGKLLQEWRSAVEVESQRTGIRP---LLLTA 148
Query: 179 AVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGF---ADVHSPLYKRPHDQWAYE 349
AV + Y V + + LD +++++Y+ G A ++ P K P
Sbjct: 149 AVYYTSDYNSVSYPVQAINRSLDWVNLIAYEFYGLTTEIGPPAGLYDPSIKGPCG----- 203
Query: 350 KLNVNDGLNLWEEXGCPTNKLVVGIPFYGRSFTL 451
+ GL W + G P K V G P+ G S+TL
Sbjct: 204 ----DTGLKHWLKAGLPEKKAVFGFPYVGWSWTL 233
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 41.5 bits (93), Expect = 5e-04
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Frame = +2
Query: 35 FDGLDLDWEYPGAADRGGSFSDKDXFLYFVQELKRAFIRXDRGWE-----LTAAVPLANF 199
F GLDL WEYP + F + V EL+ A R LTAAV ++
Sbjct: 123 FHGLDLAWEYPYSDHEMTDFGN------LVGELRAAVEAESRRSSKPTLLLTAAVYYSSV 176
Query: 200 RLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRP----HDQWAYEKLNVND 367
Y V + + LD +++++YD G V S + P H E + +
Sbjct: 177 YKTFTYPVQVMRESLDWVNIIAYDFYG------PVSSSKFTVPTAGLHVSSNNEGPSGDS 230
Query: 368 GLNLWEEXGCPTNKLVVGIPFYGRSFTL 451
GL W + G P K V+G + G ++TL
Sbjct: 231 GLKQWIKDGLPEKKAVLGFSYVGWAWTL 258
>At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 286
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 212 GYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHDQWAYEKLNVNDGLNLWEEX 391
G+H+ + Q I +R W A+ +YK P+D AYE L + G N+
Sbjct: 202 GWHIYLILQNKTTIEYHE-GVRAMW--LAEKGGQVYKHPYDIGAYENLTLILGPNILSWL 258
Query: 392 GCPTNK 409
CPT++
Sbjct: 259 -CPTSR 263
>At1g78770.1 68414.m09180 cell division cycle family protein similar
to cell division cycle protein GI:603230 from [Homo
sapiens]; contains Pfam profile PF00515 TPR Domain
148977 (apparently not full-length).
Length = 543
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 263 SYDLRGNW-AGFADVHSPLYKRPHDQWAYEKLNV 361
+Y L+GN+ A + H L+ +P DQ+ E LNV
Sbjct: 493 TYHLQGNFSAAISYYHKALWLKPDDQFCTEMLNV 526
>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1012
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 436 TFIHFICWKQQLWPWNLHQQRGWWWXPCSLYKRNWILGLL*NLH 567
TF+ +IC K L W + Q++ ++ L K W+ GL LH
Sbjct: 501 TFMRYICHKSWLGGWLMPQKKSYF--ALQLPKGWWVFGLDLALH 542
>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 932
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 436 TFIHFICWKQQLWPWNLHQQRGWWWXPCSLYKRNWILGLL*NLH 567
TF+ ++C K L W + Q++ ++ L K W+ GL LH
Sbjct: 531 TFMRYVCHKSWLGGWFMPQKKSYF--ALQLPKGWWVFGLDLALH 572
>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
kinase, putative leucine rich repeat receptor-like
kinase, Oryza sativa, PATCHX:E267533
Length = 688
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 546 GLIMKFAQK*MQMDQDGLRNGTSSGNAPTHTKELN 650
GLI K Q+D LRN T SG P K+LN
Sbjct: 202 GLIPKTLANIPQLDTLDLRNNTLSGFVPPGLKKLN 236
>At2g04840.1 68415.m00497 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 389
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 409 TSGRYSVLWTFI-HFI-CWKQQLWPW 480
T+G Y V WTFI H++ +K W W
Sbjct: 167 TTGDYVVAWTFIQHYLFFYKSGYWSW 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,740
Number of Sequences: 28952
Number of extensions: 298817
Number of successful extensions: 685
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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