BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0618 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 31 0.13 SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 27 2.2 SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 2.9 SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 5.0 SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 6.6 SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.7 SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 25 8.7 >SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 31.5 bits (68), Expect = 0.13 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -3 Query: 379 CIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLSNLCCRVRMCL*ISDK 221 C+F +LHC V +M F Y +H + + I+ + L VR CL ++K Sbjct: 204 CVFFTLHCAVLIMKQFSY--SHHMGYISEIRILHNEYEKLLKFVRECLNSTEK 254 >SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 27.5 bits (58), Expect = 2.2 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Frame = -3 Query: 403 LLYYVTQLCIFSSLH-CTVFLMLSFFYNLNHSVRPLDAIKHISFPLS--NLCCRVRMCL* 233 +L V C F C + +LSF R +DAI + S PL+ LC + + Sbjct: 205 VLLVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPLAIPLLCSGIGTIIG 264 Query: 232 ISDKLNS 212 + D L S Sbjct: 265 VDDLLMS 271 >SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 652 Score = 27.1 bits (57), Expect = 2.9 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 13 SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQ 177 SH L++ RP + Y++ + D + C I +E +PNT ++T D+ Q Sbjct: 585 SHRPLVLGSNVRPVSERYNE-QIAEDVL---CDILDEIDYAEDPNTSSVTIDVPQ 635 >SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 26.2 bits (55), Expect = 5.0 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -3 Query: 460 NLIIKES-YQRI--FPNIIISLLLYYVTQLCIFSSLHCTVFLMLSFFYN-LNHSV 308 N +IK+S +QR+ FPN++++ + T + S H T+ F+ N L+ SV Sbjct: 274 NEVIKDSTFQRLVNFPNVLVTSHQAFFTTEALCSIAHTTLKSASDFYTNSLDESV 328 >SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 573 Score = 25.8 bits (54), Expect = 6.6 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -3 Query: 595 SNIGLNNVHTLTTACMWDGLIVFTL 521 S IG NV + CMW G I+FTL Sbjct: 509 SIIGYGNVMWIFCGCMWGG-ILFTL 532 >SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1082 Score = 25.4 bits (53), Expect = 8.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 461 NLFY**SSTFSTVIYVKSPT*RENYKSIPHASSCQCMYII 580 N F SS S+++Y +PT ENY S S+ + +I Sbjct: 452 NTFIPSSSIKSSIVYSVTPTSAENYTSSEAFSTSSSLVVI 491 >SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 572 Score = 25.4 bits (53), Expect = 8.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 589 IGLNNVHTLTTACMWDGLIVFTL 521 IG NV + CMW G I+FTL Sbjct: 510 IGYGNVMWIFCGCMWGG-ILFTL 531 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,949,338 Number of Sequences: 5004 Number of extensions: 61307 Number of successful extensions: 165 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 165 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -