Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0618
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    31   0.13 
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   2.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   2.9  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   5.0  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   6.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.7  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   8.7  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 379 CIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLSNLCCRVRMCL*ISDK 221
           C+F +LHC V +M  F Y  +H +  +  I+ +      L   VR CL  ++K
Sbjct: 204 CVFFTLHCAVLIMKQFSY--SHHMGYISEIRILHNEYEKLLKFVRECLNSTEK 254


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 403 LLYYVTQLCIFSSLH-CTVFLMLSFFYNLNHSVRPLDAIKHISFPLS--NLCCRVRMCL* 233
           +L  V   C F     C +  +LSF        R +DAI + S PL+   LC  +   + 
Sbjct: 205 VLLVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPLAIPLLCSGIGTIIG 264

Query: 232 ISDKLNS 212
           + D L S
Sbjct: 265 VDDLLMS 271


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 13  SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQ 177
           SH  L++    RP +  Y++ +   D +   C I +E     +PNT ++T D+ Q
Sbjct: 585 SHRPLVLGSNVRPVSERYNE-QIAEDVL---CDILDEIDYAEDPNTSSVTIDVPQ 635


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -3

Query: 460 NLIIKES-YQRI--FPNIIISLLLYYVTQLCIFSSLHCTVFLMLSFFYN-LNHSV 308
           N +IK+S +QR+  FPN++++    + T   + S  H T+     F+ N L+ SV
Sbjct: 274 NEVIKDSTFQRLVNFPNVLVTSHQAFFTTEALCSIAHTTLKSASDFYTNSLDESV 328


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 595 SNIGLNNVHTLTTACMWDGLIVFTL 521
           S IG  NV  +   CMW G I+FTL
Sbjct: 509 SIIGYGNVMWIFCGCMWGG-ILFTL 532


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 461 NLFY**SSTFSTVIYVKSPT*RENYKSIPHASSCQCMYII 580
           N F   SS  S+++Y  +PT  ENY S    S+   + +I
Sbjct: 452 NTFIPSSSIKSSIVYSVTPTSAENYTSSEAFSTSSSLVVI 491


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 589 IGLNNVHTLTTACMWDGLIVFTL 521
           IG  NV  +   CMW G I+FTL
Sbjct: 510 IGYGNVMWIFCGCMWGG-ILFTL 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,338
Number of Sequences: 5004
Number of extensions: 61307
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)