Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0618
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0584 - 24082867-24082960,24083071-24083191,24083693-240837...   108   5e-24
01_06_0888 + 32738275-32739567                                         30   2.3  

>02_04_0584 -
           24082867-24082960,24083071-24083191,24083693-24083786,
           24084675-24084725
          Length = 119

 Score =  108 bits (259), Expect = 5e-24
 Identities = 43/97 (44%), Positives = 67/97 (69%)
 Frame = +1

Query: 16  HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFVD 195
           HTI+L+QP     +RT+ DY S+N  ++G+C +YE  ++  NP  P ITYDI+ L++F+D
Sbjct: 21  HTIILMQPSQNRASRTFMDYNSINHALDGLCGLYERKIRDINPMVPNITYDITDLYNFID 80

Query: 196 QLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 306
            LAD+S LVY  S   + PY++ WIK+K++  L++ A
Sbjct: 81  GLADISALVYDHSIQAFLPYDRQWIKQKLFQHLKKLA 117


>01_06_0888 + 32738275-32739567
          Length = 430

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +1

Query: 94  MEGVCKIYEEHLKRRNP--NTPTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDW 267
           + GVC+ + EHL+R  P    P + Y I  L    +QLA  SC++   +T+ +  +  +W
Sbjct: 31  LAGVCRPWREHLERLPPLLPPPKLPYLILPL---AEQLA-FSCVLSDCATHPF--FVPEW 84

Query: 268 IKEKIY 285
           I+   Y
Sbjct: 85  IRHACY 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,717
Number of Sequences: 37544
Number of extensions: 329476
Number of successful extensions: 675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)