Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0618
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical pr...   120   8e-28
Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical p...    99   2e-21
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    30   1.5  
AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical...    29   2.7  
Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical
           protein T21C9.4 protein.
          Length = 103

 Score =  120 bits (290), Expect = 8e-28
 Identities = 51/94 (54%), Positives = 71/94 (75%)
 Frame = +1

Query: 13  SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFV 192
           SHTILL+QP    E+R++SDYE+  +C+EG+C++YEE+LK++ P    ITYDIS LF+F+
Sbjct: 2   SHTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHLFEFI 61

Query: 193 DQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLL 294
           D L DLS LV   +T TY P+NK ++KE IY L+
Sbjct: 62  DDLKDLSMLVLDNTTYTYVPHNKQYVKESIYKLM 95


>Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical
           protein F35G12.11 protein.
          Length = 113

 Score =   99 bits (238), Expect = 2e-21
 Identities = 37/95 (38%), Positives = 70/95 (73%)
 Frame = +1

Query: 13  SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFV 192
           SHT+LL+Q  PR ++RT+ DYESV D ++ +CK++E+ L ++  +   +TYD+SQ+++F+
Sbjct: 5   SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKK--SAAPVTYDVSQVYEFL 62

Query: 193 DQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLR 297
           D+L+D+S +++ + T  Y    + WIK+++Y ++R
Sbjct: 63  DKLSDVSMMIFNRETGQYIGRTRAWIKQQVYEMMR 97


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 124 HLKRRNPNTPTITYDISQLFDFVDQLADLSCLVYQKSTNTYAPYNKDW 267
           H+  +N  TPTI     Q  D   QL D+   + Q++   Y  +NK W
Sbjct: 243 HVNVQNVLTPTIDAMFGQPPDAFCQLPDIPLTLCQQALLAYREHNKQW 290


>AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical
           protein Y75B8A.34 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = -3

Query: 436 QRIFPNIIISLLLYYVTQLCIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLSNLC 257
           Q++F  ++I+ +LY VTQ+  + ++   +    S    L      L+ +  IS PLS + 
Sbjct: 253 QKVFVQLLITAILYGVTQI-FYEAIAFFLITETSLKLFLISIFNVLNYLPEISLPLSVIA 311

Query: 256 CRVRM 242
            ++R+
Sbjct: 312 SKIRL 316


>Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical
           protein F58A4.4 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 YITTLRFCRPVGRSELFSLSEIYK 239
           +IT  +F   VGR +L SLSE YK
Sbjct: 239 FITEYKFMSEVGRDDLRSLSETYK 262


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 157 ITYDISQLFDFVDQLADLSCLVYQKSTNT 243
           +TYD+ +LFD+V++L DLS L     T T
Sbjct: 389 LTYDL-RLFDYVEKLKDLSSLKNIVETTT 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,089
Number of Sequences: 27780
Number of extensions: 339333
Number of successful extensions: 883
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)