Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0618
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   4.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.3  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 127 LKRRNPNTPTITYDISQLFDFVDQLADLSCLVYQKSTNTY 246
           LKRRN        D  Q    +  +  +S  +Y++  N Y
Sbjct: 333 LKRRNIEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEY 372


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 618 SCKIQTRTNSVPASSKKLDC 677
           +CK  T +NS   SSK L C
Sbjct: 102 NCKDITESNSCKKSSKLLQC 121


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 431 NFSKHNNFSLTVLCYTTMY 375
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 431 NFSKHNNFSLTVLCYTTMY 375
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 431 NFSKHNNFSLTVLCYTTMY 375
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 431 NFSKHNNFSLTVLCYTTMY 375
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 431 NFSKHNNFSLTVLCYTTMY 375
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 468 FISEVQHLALLFM*NHL 518
           F  EVQHLA  F+ N+L
Sbjct: 392 FPDEVQHLARRFLNNYL 408


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 600 FVVFLISCKIQTRTNSVPASSK 665
           F + L SC   +R N+VP+S +
Sbjct: 9   FFLLLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 600 FVVFLISCKIQTRTNSVPASSK 665
           F + L SC   +R N+VP+S +
Sbjct: 9   FFLLLSSCTRPSRGNAVPSSQR 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,256
Number of Sequences: 438
Number of extensions: 4034
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)