Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0618
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10810.1 68418.m01256 enhancer of rudimentary protein, putati...   109   2e-24
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa...    31   0.62 
At3g26040.1 68416.m03243 transferase family protein similar to d...    29   3.3  

>At5g10810.1 68418.m01256 enhancer of rudimentary protein, putative
           identical to enhancer of rudimentary homolog SP:Q96319
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF01133 enhancer of rudimentary
          Length = 109

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/97 (47%), Positives = 67/97 (69%)
 Frame = +1

Query: 16  HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFVD 195
           HTI+L+Q  P   TRT+ DY+S+   M+G+C +YE  LK  NP+   I+YDI+ L++F+D
Sbjct: 9   HTIILLQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFID 68

Query: 196 QLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 306
            LADLS LVY  S + Y PY++ WIK+K +  L++ A
Sbjct: 69  GLADLSALVYDHSISAYLPYDRQWIKQKAFHHLKRIA 105


>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 64  YSDYESVNDCMEGVCKIY 117
           +S Y+S NDC +G+C IY
Sbjct: 8   WSPYDSYNDCSQGICNIY 25


>At3g26040.1 68416.m03243 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], alcohol
           acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141]
          Length = 442

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 385 QLCIFSSLHCTVFLMLSFFYNLNHSVRPLDAIKHISFPLS 266
           +L +   L  T+F  + FFY+ N+S++P + ++ +   LS
Sbjct: 25  KLSLLEQLGPTIFGPMVFFYSANNSIKPTEQLQMLKKSLS 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,606
Number of Sequences: 28952
Number of extensions: 292208
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)