Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0617
         (539 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A1E33 Cluster: UPI00006A1E33 related cluster; n...    36   0.79 
UniRef50_Q5CUB5 Cluster: Large Sec7 domain containing protein; n...    32   7.3  
UniRef50_UPI00006CAEC5 Cluster: PRP38 family protein; n=1; Tetra...    32   9.7  
UniRef50_Q55GE4 Cluster: Putative uncharacterized protein; n=5; ...    32   9.7  

>UniRef50_UPI00006A1E33 Cluster: UPI00006A1E33 related cluster;
           n=102; Xenopus tropicalis|Rep: UPI00006A1E33 UniRef100
           entry - Xenopus tropicalis
          Length = 353

 Score = 35.5 bits (78), Expect = 0.79
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +1

Query: 106 LSKLTFC*TSIFRTQFAA*TKFILSSFNDILIAVLYHLNYXXXXXXDMR--LFYPLIFSE 279
           LSKLTFC +++ ++ F    + +  S +D  I VL    +       +    FYP I   
Sbjct: 203 LSKLTFCSSNVLQSFFCDLPQLLQVSCSDTFINVLLIFLFGILLGIGILGVTFYPYITII 262

Query: 280 VSIVQVILMQRNASVF*RLTSKLTVVNLTHVRLF 381
           ++++++      A  F   +S LTVV++ +   F
Sbjct: 263 ITVLKIPSKNMRAKAFSTCSSHLTVVSIFYSTAF 296


>UniRef50_Q5CUB5 Cluster: Large Sec7 domain containing protein; n=2;
            Cryptosporidium|Rep: Large Sec7 domain containing protein
            - Cryptosporidium parvum Iowa II
          Length = 2578

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +2

Query: 56   VQIKYEKKNNSIFKNVNYQN*HSVRQAFFVRNSQL-RLSLSYQVSMISLLQYYTI*IISL 232
            +Q+   +K N+I KNV  +N + +   +F   SQL   SL ++   + L  YY + I  L
Sbjct: 1763 LQLLNIRKTNNIRKNVYNKNQYKLILCYFNEFSQLITKSLIFEKKYLDLYYYYLVNISKL 1822

Query: 233  ELDWICVSSIRL 268
               W+ +  I L
Sbjct: 1823 INYWLGICPIEL 1834


>UniRef50_UPI00006CAEC5 Cluster: PRP38 family protein; n=1;
           Tetrahymena thermophila SB210|Rep: PRP38 family protein
           - Tetrahymena thermophila SB210
          Length = 2835

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = -3

Query: 492 KPRSYFIRSLSTHKQY*---ANFG*PLKKTSNTMQNIQGSKQSDMCQIDNCQF*CKTSED 322
           KP+SY ++ LS +        N     +K  N++ N Q  KQS        Q  C + + 
Sbjct: 412 KPKSYLLQDLSLNNSALIDTTNTYERNQKNFNSLNNSQKQKQSFSLYCSQNQEECISPKK 471

Query: 321 TCIPLHEN---NLNY*YFTENKRIEET 250
            CIP+  N    +N  Y+ +N    ET
Sbjct: 472 ICIPIQNNQNRQVNQNYYLKNYSNSET 498


>UniRef50_Q55GE4 Cluster: Putative uncharacterized protein; n=5;
            Eukaryota|Rep: Putative uncharacterized protein -
            Dictyostelium discoideum AX4
          Length = 5277

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = +2

Query: 26   KLXASNSNIHVQIKYEKKNNSIFKNVNYQN*HSVRQAFFVRNSQLRLSLSYQVSMISLLQ 205
            ++ AS  N   Q K +  N     ++ Y+N  ++RQ +   N  L L+      MI+   
Sbjct: 4195 EIIASIKNDFNQYKLKINNQICQSSIQYENLFNIRQLYSKTNQSLLLTNEQIQGMIASKD 4254

Query: 206  --YYTI*IISLELDWICVSSIRLFSVKY--Q*FKLFS 304
              Y  I     E+D IC+S   L  +K+    +KLFS
Sbjct: 4255 DGYSPIKKFIAEIDNICLSKYFLTIIKFLDLFYKLFS 4291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,225,309
Number of Sequences: 1657284
Number of extensions: 7212537
Number of successful extensions: 15108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15102
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)