BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0617 (539 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 0.77 SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 7.2 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 7.2 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.2 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 28.3 bits (60), Expect = 0.77 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -3 Query: 417 KTSNTMQNIQGSKQSDMCQIDNCQF*CKTSEDTCIPLHENNLNY 286 KT QNI K+ C I+ ++ +EDTCI NLNY Sbjct: 601 KTGTLTQNIMSFKK---CSINGIRYGKSHNEDTCIK-KRRNLNY 640 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 25.0 bits (52), Expect = 7.2 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +3 Query: 15 NAIKNYXRLIRISMFKSNTKKKTIPFSKTLIIKTDILLDKHFSYAIRSLD 164 N +K L++ + + KKT+PF K+++ LDKH ++D Sbjct: 78 NKVKAQDELLKKKVKELTAMKKTVPF------KSEVELDKHVKQLQAAVD 121 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 25.0 bits (52), Expect = 7.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 27 NYXRLIRISMFKSNTKKKTIPFSKTLIIKTDILLDK 134 NY ++ I +FK+N ++T+ + I+T I +K Sbjct: 176 NYLQISGIPLFKNNVFEETVSKKRKRTIETSITQNK 211 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 25.0 bits (52), Expect = 7.2 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +3 Query: 141 SYAIRSLD*VYPIKFQ*YPYCSIIPSELSHLNLI 242 SYA+ S+ + + F Y YC + P +LNLI Sbjct: 7 SYALGSIVRIKLVNFVTYDYCELFPG--PYLNLI 38 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,866,439 Number of Sequences: 5004 Number of extensions: 35093 Number of successful extensions: 56 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 56 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 221892220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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