Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0617
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   0.77 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   7.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   7.2  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.2  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 417 KTSNTMQNIQGSKQSDMCQIDNCQF*CKTSEDTCIPLHENNLNY 286
           KT    QNI   K+   C I+  ++    +EDTCI     NLNY
Sbjct: 601 KTGTLTQNIMSFKK---CSINGIRYGKSHNEDTCIK-KRRNLNY 640


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 15  NAIKNYXRLIRISMFKSNTKKKTIPFSKTLIIKTDILLDKHFSYAIRSLD 164
           N +K    L++  + +    KKT+PF      K+++ LDKH      ++D
Sbjct: 78  NKVKAQDELLKKKVKELTAMKKTVPF------KSEVELDKHVKQLQAAVD 121


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 27  NYXRLIRISMFKSNTKKKTIPFSKTLIIKTDILLDK 134
           NY ++  I +FK+N  ++T+   +   I+T I  +K
Sbjct: 176 NYLQISGIPLFKNNVFEETVSKKRKRTIETSITQNK 211


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 141 SYAIRSLD*VYPIKFQ*YPYCSIIPSELSHLNLI 242
           SYA+ S+  +  + F  Y YC + P    +LNLI
Sbjct: 7   SYALGSIVRIKLVNFVTYDYCELFPG--PYLNLI 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,439
Number of Sequences: 5004
Number of extensions: 35093
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)