Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0617
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    30   1.0  

>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 36  RLIRISMFKSNTKKKTIPFSKTLIIKTDILLDKHFSYAIRSL 161
           R++R+S FK NTK+   P S     K D++L+   +YA+  L
Sbjct: 162 RIVRVSSFKLNTKRWFTP-SGWRRTKEDVILEMKNAYAVSRL 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,055,124
Number of Sequences: 37544
Number of extensions: 166702
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)