BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0617 (539 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777... 30 1.0 >07_03_1494 - 26976654-26976749,26976945-26977001,26977644-26977712, 26977892-26977993,26978081-26978149,26979205-26979297, 26979908-26979959,26980549-26980635,26980720-26980802, 26980909-26981040,26981132-26981205,26981280-26981341, 26981428-26981513 Length = 353 Score = 30.3 bits (65), Expect = 1.0 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = +3 Query: 36 RLIRISMFKSNTKKKTIPFSKTLIIKTDILLDKHFSYAIRSL 161 R++R+S FK NTK+ P S K D++L+ +YA+ L Sbjct: 162 RIVRVSSFKLNTKRWFTP-SGWRRTKEDVILEMKNAYAVSRL 202 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,055,124 Number of Sequences: 37544 Number of extensions: 166702 Number of successful extensions: 261 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 261 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1198356516 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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