Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0617
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical p...    29   2.8  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    27   6.5  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    27   6.5  

>U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK177.1 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +3

Query: 198 YCSIIPSELSHLNLIGYASLLSAYFQ*SINSSSYSHATECKCLLTSYIKTDSCQFDTCQI 377
           +  I+P++++ L L  Y  L  + F  SI  S +S  T C+ LL S+ +  +   D    
Sbjct: 5   FSKILPTKINFLGLRTYQKLFESVFNTSILHSFFSLYTPCR-LLRSFGQRSTVVSDFYLQ 63

Query: 378 VLSXXXXXXXXXXXXMVNQSLLNI 449
           ++S              N  ++N+
Sbjct: 64  IISFEKMGKREVRPFFCNDHVMNL 87


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 191 ISLLQYYTI*IISLELDWICVSSIRLFSVKYQ*FKLFSCNGMQV 322
           I L  Y T  I+ LE DW+     R+F + +    LFS  G+ +
Sbjct: 488 IQLTPYCTRNIVELEWDWVAAVLERVFLIFFTICFLFSAIGINL 531


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 191 ISLLQYYTI*IISLELDWICVSSIRLFSVKYQ*FKLFSCNGMQV 322
           I L  Y T  I+ LE DW+     R+F + +    LFS  G+ +
Sbjct: 488 IQLTPYCTRNIVELEWDWVAAVLERVFLIFFTICFLFSAIGINL 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,191
Number of Sequences: 27780
Number of extensions: 186635
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)