BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0617 (539 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U21321-11|AAG00044.1| 460|Caenorhabditis elegans Hypothetical p... 29 2.8 AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 27 6.5 AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 27 6.5 >U21321-11|AAG00044.1| 460|Caenorhabditis elegans Hypothetical protein ZK177.1 protein. Length = 460 Score = 28.7 bits (61), Expect = 2.8 Identities = 20/84 (23%), Positives = 37/84 (44%) Frame = +3 Query: 198 YCSIIPSELSHLNLIGYASLLSAYFQ*SINSSSYSHATECKCLLTSYIKTDSCQFDTCQI 377 + I+P++++ L L Y L + F SI S +S T C+ LL S+ + + D Sbjct: 5 FSKILPTKINFLGLRTYQKLFESVFNTSILHSFFSLYTPCR-LLRSFGQRSTVVSDFYLQ 63 Query: 378 VLSXXXXXXXXXXXXMVNQSLLNI 449 ++S N ++N+ Sbjct: 64 IISFEKMGKREVRPFFCNDHVMNL 87 >AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine receptor (62.5 kD)(acr-23) protein. Length = 545 Score = 27.5 bits (58), Expect = 6.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 191 ISLLQYYTI*IISLELDWICVSSIRLFSVKYQ*FKLFSCNGMQV 322 I L Y T I+ LE DW+ R+F + + LFS G+ + Sbjct: 488 IQLTPYCTRNIVELEWDWVAAVLERVFLIFFTICFLFSAIGINL 531 >AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine receptor protein 23 protein. Length = 545 Score = 27.5 bits (58), Expect = 6.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 191 ISLLQYYTI*IISLELDWICVSSIRLFSVKYQ*FKLFSCNGMQV 322 I L Y T I+ LE DW+ R+F + + LFS G+ + Sbjct: 488 IQLTPYCTRNIVELEWDWVAAVLERVFLIFFTICFLFSAIGINL 531 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,037,191 Number of Sequences: 27780 Number of extensions: 186635 Number of successful extensions: 349 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 349 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1081316076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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