Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0617
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   0.86 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 145 YEKCLSNRMSVLIINVFENGIVFFFVFDLNMDIRIR 38
           Y   LSNRM  +I N F    V F +   N+D  +R
Sbjct: 380 YMLALSNRMQKIINNDFNFNDVNFRILGANVDDLMR 415


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 142 EKCLSNRMSVLIINVFENGIVFFFVFDLNMDIRIR 38
           E CL +R++++  NVF+      ++ D +MD+ ++
Sbjct: 57  EACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLK 91


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 26  KLXASNSNIHVQIKYEKKNNSIFKNVNYQ 112
           K+ +S SN +    Y   NN+ + N NY+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 26  KLXASNSNIHVQIKYEKKNNSIFKNVNYQ 112
           K+ +S SN +    Y   NN+ + N NY+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 26  KLXASNSNIHVQIKYEKKNNSIFKNVNYQ 112
           K+ +S SN +    Y   NN+ + N NY+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 26  KLXASNSNIHVQIKYEKKNNSIFKNVNYQ 112
           K+ +S SN +    Y   NN+ + N NY+
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 178 SSFNDILIAVLYHLNYXXXXXXDMRLFYPLIFSEV 282
           ++F  ++  ++ +L+Y      D R+F  L F ++
Sbjct: 329 TTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQI 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,914
Number of Sequences: 438
Number of extensions: 2392
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)