Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0617
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12020.1 68417.m01912 protein kinase family protein similar t...    30   1.1  
At1g55500.1 68414.m06349 expressed protein contains Pfam profile...    27   8.0  

>At4g12020.1 68417.m01912 protein kinase family protein similar to
           mitogen-activated protein kinase [Arabidopsis thaliana]
           GI:1255448; contains Pfam profiles PF02671: Paired
           amphipathic helix repeat, PF03106: WRKY DNA-binding
           domain, PF00560: Leucine Rich Repeat, PF00069: Protein
           kinase domain, PF00931: NB-ARC domain
          Length = 1798

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 426 PLKKTSNTMQNIQGSKQSDMCQIDNCQF*CKTSEDTCI 313
           P+   S   Q +  S  S +CQ++ CQ   + +   CI
Sbjct: 73  PISSGSGLSQQLNNSSSSKLCQVEGCQKGARDASGRCI 110


>At1g55500.1 68414.m06349 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 549

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 398 KIFKAQNNLTCVKLTTVSFDVRRQKTL 318
           KIFK  N+ TC+ L   SF   RQKT+
Sbjct: 493 KIFKEHNSKTCI-LDDFSFYEARQKTI 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,013,801
Number of Sequences: 28952
Number of extensions: 159632
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)