Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0616
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                    204   7e-53
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   31   0.68 
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 31   1.2  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   2.1  
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)                29   3.6  
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)                  28   6.3  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score =  204 bits (497), Expect = 7e-53
 Identities = 89/187 (47%), Positives = 130/187 (69%)
 Frame = +1

Query: 76  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 255
           P  Y DLGK+A DVF KGY FG  K+DLKT +++GVEF +  +S  ++GKVFGSL +K+ 
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYK 159

Query: 256 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 435
             DYG++ +EKW TDN L+++IT++D+IA GLK+  + TFAP TG K+ K+KT++  D +
Sbjct: 160 YSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYL 219

Query: 436 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALHTN 615
               ++D D AGP V  +AV+ Y+GW AG    +DT K+K   NNF+L Y++ DF +H+ 
Sbjct: 220 HATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSA 279

Query: 616 VDNGKDF 636
           V++   F
Sbjct: 280 VNDASKF 286


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 415 SFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQ--FDTQKAKFSKNNFALSYQ 588
           ++TN   A++T     +AGPVV V+A LN       + +Q  F T KA+    NF     
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLNDPVAKTVLVSQEFFITAKAEI---NFEWRAS 269

Query: 589 SGDFALHTNVDNGKDF 636
             D A  T ++   DF
Sbjct: 270 CADSAAQTAIEGNADF 285


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -3

Query: 470 PAKSRSKLVFTATVSLVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSV 294
           P K     VF AT+ L + V N  V+   CG A+ P    L     ++ +V +++  LSV
Sbjct: 26  PVKGILLGVFAATI-LGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSV 84

Query: 293 FHFSVKVKP*SFTANLEERLPKTFPLSWLEVIP 195
            +  ++  P  F   L +   + +P+ +  VIP
Sbjct: 85  IYLELEYWPYGFRCKLSDIGYRPYPILFPIVIP 117


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 292 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 441
           +TD N L +D + +DK     K   E T    +   TGKL+T +  DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859


>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
          Length = 632

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 246 GGKAAKNLSAFLVGGDPAGEFN 181
           GG A   L  +LVGGDP  +FN
Sbjct: 389 GGGAGGELRYYLVGGDPQSQFN 410


>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 193 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 336
           SG+   +ESG+   SL+   A     L  T+  NTD T  TD T Q+K
Sbjct: 65  SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111


>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
          Length = 291

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 442 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 573
           N  L +DL   V  V  VL +    WL   +T F+T+K K +KN+F
Sbjct: 95  NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -3

Query: 338  ILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVNSTPDSLL 165
            + ++   S ANVL V+  SV +KP      LEE       L W +     ++TP++++
Sbjct: 871  LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---ASTTPETVI 925


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 373 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 510
           +AP    K  +L T F +DT AVN N    ++      +  +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 298  DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 447
            ++TLA +ITI  +  +A G  +  E TFAP+T TK  +   +    T    T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,310,566
Number of Sequences: 59808
Number of extensions: 435290
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)