BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0615 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 1.5 SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.0 SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 27 2.0 SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.4 SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 4.5 SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 7.9 SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.9 SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9 SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 7.9 >SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 530 Score = 27.9 bits (59), Expect = 1.5 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +1 Query: 358 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLIS 537 A+ VSA + TP V+++ + + TS + I+ T+S A AS T S Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSS 292 Query: 538 GRG 546 G Sbjct: 293 VSG 295 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 27.5 bits (58), Expect = 2.0 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = +3 Query: 357 CSAGRVCEINEHGDAMCNCIKDC 425 C+A R+C++ E C+ DC Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996 >SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizosaccharomyces pombe|chr 3|||Manual Length = 626 Score = 27.5 bits (58), Expect = 2.0 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Frame = +1 Query: 310 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 489 +K W + S A+Q S T A R P Q D+W ++ P + I Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183 Query: 490 AKY-TASDAYASTT 528 ++Y + YA T Sbjct: 184 SQYANMPENYALNT 197 >SPCC1235.09 |||histone deacetylase complex subunit|Schizosaccharomyces pombe|chr 3|||Manual Length = 564 Score = 26.6 bits (56), Expect = 3.4 Identities = 19/80 (23%), Positives = 39/80 (48%) Frame = -3 Query: 389 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 210 ++ F + + V+ RV+ VD + + + + + + L +SLL+ A + + Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413 Query: 209 VFSLRDVPAAELLRRWTFSS 150 ++S D A E L ++FSS Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433 >SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 794 Score = 26.2 bits (55), Expect = 4.5 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 263 FCLMVSLLVQALRHSVLDVFSLRD 192 FCL ++ ++ LR+SV V +LRD Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472 >SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a Pol2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 2199 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 623 DISLSVQSGISRHVP*YSI*TWWYCGPRPLIRVVE 519 DI S+ SR + ++I WW GP P + +E Sbjct: 1635 DIQYSIDVVYSRKLKEHNIILWWNKGPTPDLGGIE 1669 >SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 25.4 bits (53), Expect = 7.9 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +1 Query: 349 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTK--PGNRIAKYTASDAYAS 522 KST+ D+ + STNT + PT+ DA A + K +++K T + S Sbjct: 251 KSTS--DLGSLSTNTSSTAQKNKSRKPTKSFSDAVAAASRAKELEKEKLSKVTVTPD-DS 307 Query: 523 TTLISGRGPQ 552 T++I G P+ Sbjct: 308 TSIIRGFDPR 317 >SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 230 Score = 25.4 bits (53), Expect = 7.9 Identities = 17/66 (25%), Positives = 29/66 (43%) Frame = +1 Query: 373 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQ 552 S S+++ + T+ + P+ + TS+ G + TASD AS +IS Sbjct: 53 STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110 Query: 553 YHHVQI 570 H Q+ Sbjct: 111 SIHQQV 116 >SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr 1|||Manual Length = 734 Score = 25.4 bits (53), Expect = 7.9 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = -3 Query: 437 CLVGTVLDAVTHGVSVFVDFADT-SC 363 CL+ + LD +T G+S F++ D SC Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,629,163 Number of Sequences: 5004 Number of extensions: 48246 Number of successful extensions: 136 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 136 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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