Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0615
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 1.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.0
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 27 2.0
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.4
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 4.5
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 7.9
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.9
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 7.9
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 358 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLIS 537
A+ VSA + TP V+++ + + TS + I+ T+S A AS T S
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSS 292
Query: 538 GRG 546
G
Sbjct: 293 VSG 295
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 357 CSAGRVCEINEHGDAMCNCIKDC 425
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 310 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 489
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 490 AKY-TASDAYASTT 528
++Y + YA T
Sbjct: 184 SQYANMPENYALNT 197
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = -3
Query: 389 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 210
++ F + + V+ RV+ VD + + + + + + L +SLL+ A + +
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413
Query: 209 VFSLRDVPAAELLRRWTFSS 150
++S D A E L ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 263 FCLMVSLLVQALRHSVLDVFSLRD 192
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 623 DISLSVQSGISRHVP*YSI*TWWYCGPRPLIRVVE 519
DI S+ SR + ++I WW GP P + +E
Sbjct: 1635 DIQYSIDVVYSRKLKEHNIILWWNKGPTPDLGGIE 1669
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 349 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTK--PGNRIAKYTASDAYAS 522
KST+ D+ + STNT + PT+ DA A + K +++K T + S
Sbjct: 251 KSTS--DLGSLSTNTSSTAQKNKSRKPTKSFSDAVAAASRAKELEKEKLSKVTVTPD-DS 307
Query: 523 TTLISGRGPQ 552
T++I G P+
Sbjct: 308 TSIIRGFDPR 317
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 373 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQ 552
S S+++ + T+ + P+ + TS+ G + TASD AS +IS
Sbjct: 53 STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110
Query: 553 YHHVQI 570
H Q+
Sbjct: 111 SIHQQV 116
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 437 CLVGTVLDAVTHGVSVFVDFADT-SC 363
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,163
Number of Sequences: 5004
Number of extensions: 48246
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -