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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0615
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   1.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.0  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   3.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   4.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.9  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   7.9  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.9  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 358 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLIS 537
           A+  VSA +    TP V+++    +        + TS    + I+  T+S A AS T  S
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSS 292

Query: 538 GRG 546
             G
Sbjct: 293 VSG 295


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 357  CSAGRVCEINEHGDAMCNCIKDC 425
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +1

Query: 310 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 489
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 490 AKY-TASDAYASTT 528
           ++Y    + YA  T
Sbjct: 184 SQYANMPENYALNT 197


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -3

Query: 389 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 210
           ++ F +   + V+   RV+ VD    +  +    +  + +  + L +SLL+ A   + + 
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413

Query: 209 VFSLRDVPAAELLRRWTFSS 150
           ++S  D  A E L  ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 263 FCLMVSLLVQALRHSVLDVFSLRD 192
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 623  DISLSVQSGISRHVP*YSI*TWWYCGPRPLIRVVE 519
            DI  S+    SR +  ++I  WW  GP P +  +E
Sbjct: 1635 DIQYSIDVVYSRKLKEHNIILWWNKGPTPDLGGIE 1669


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 349 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTK--PGNRIAKYTASDAYAS 522
           KST+  D+ + STNT +         PT+   DA  A +  K     +++K T +    S
Sbjct: 251 KSTS--DLGSLSTNTSSTAQKNKSRKPTKSFSDAVAAASRAKELEKEKLSKVTVTPD-DS 307

Query: 523 TTLISGRGPQ 552
           T++I G  P+
Sbjct: 308 TSIIRGFDPR 317


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 373 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQ 552
           S  S+++ +   T+  + P+  +       TS+  G  +   TASD  AS  +IS     
Sbjct: 53  STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110

Query: 553 YHHVQI 570
             H Q+
Sbjct: 111 SIHQQV 116


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 437 CLVGTVLDAVTHGVSVFVDFADT-SC 363
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,163
Number of Sequences: 5004
Number of extensions: 48246
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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