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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0615
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962...    32   0.50 
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845     30   1.5  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   2.7  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    29   3.5  
10_08_0486 - 18239351-18239592,18240893-18240984,18241279-182413...    29   3.5  
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335...    29   3.5  
03_02_0520 + 9092020-9092079,9092253-9093047                           29   4.7  
11_06_0344 + 22540436-22540737,22541304-22543545                       28   6.2  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   6.2  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   6.2  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   8.2  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    28   8.2  
06_01_0985 - 7646772-7647451,7647957-7648107                           28   8.2  
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576...    28   8.2  
01_06_1411 + 37127098-37128279                                         28   8.2  

>08_01_0961 -
           9622444-9622928,9623011-9623102,9623862-9624002,
           9624460-9624506,9624581-9624639,9624780-9624940,
           9625021-9625196,9625284-9625355,9625820-9625879,
           9625997-9626191
          Length = 495

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 464 LQRNLAIGLRSIPPAMLMPRQL*SVAVVRNTTTFKSSITERA-EKCLTALKARCLTSPVA 640
           L +   + +R +P + L    +  V + R     K+S++    + C   L   C  S   
Sbjct: 276 LTKRSEVPVRILPSSYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEG 335

Query: 641 CGTGFLTSCATWL 679
           CG  F T CA +L
Sbjct: 336 CGHEFCTKCALYL 348


>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
          Length = 439

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -3

Query: 305 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 132
           F+ D    +  SG+  + LM+     ALR +V   F         L R W FS  G  P 
Sbjct: 9   FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68

Query: 131 VPTP 120
             +P
Sbjct: 69  QSSP 72


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 536 VAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 652
           +  +RN  + + S+ E +   C++  K + LT+PVA G G
Sbjct: 397 IPAIRNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 415 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 516
           +R  P  QTPDA  A + T+P  ++   +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413


>10_08_0486 -
           18239351-18239592,18240893-18240984,18241279-18241364,
           18241442-18241643,18241743-18241960,18242524-18242640
          Length = 318

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +1

Query: 409 TASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQYHHVQIEYYGTC 588
           TASR+       D W      +  +R    T+ D+  +   ISG   ++ H+  E++  C
Sbjct: 109 TASRSFGEDNGMDYWSDDEDNEKMSRSWSSTSEDSLFNCDAISGNRKRHGHMYFEFFEVC 168


>09_04_0330 +
           16731390-16731699,16731774-16732080,16732182-16733561,
           16734064-16734112
          Length = 681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 348 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 482
           K   +A  VCE +  G+ + +C      + D  RM C +  E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 218 VLDVFSLRDVPAAELLRRWTFSSR 147
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 560 TFKSSITERAEKCLTALKARCLTSP 634
           T +S   ERAE+C + L  RC+  P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 334 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 477
           +T A    ++Q ++   T+ ++   ++S TV + + P +W   TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 281 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 147
           + + G F  +  L   AL+  VLD+ ++  +PA  +L+RWT  +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -3

Query: 404  HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 261
            HG+ V  +FAD S   V++         +  V+ F  + FIR+L E  + S  F
Sbjct: 984  HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037


>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 269 GYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 147
           G F     L   AL+  VLD+ +++ +P+  +L+RWT  +R
Sbjct: 484 GMFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522


>06_01_0985 - 7646772-7647451,7647957-7648107
          Length = 276

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 218 VLDVFSLRDVPAAELLRRWTFSSR 147
           VLDV +++ +P   +L+RWT  +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263


>05_06_0246 +
           26656629-26656907,26657001-26657228,26657595-26657630,
           26658362-26658475,26658562-26659167
          Length = 420

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 241 SSKLSDIPCSMCSASEMSPRPSCSDVG 161
           S+  SD PC + SAS  S  P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336


>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +2

Query: 410 LHQGLSLRDRLQTHGVHKLQRNLAIGLRSIPPAMLMPRQL*SVAVVRNT 556
           LH   SLR  L++   H+L+R+    LR++P  + +P ++ S AVV N+
Sbjct: 128 LHLDPSLRRALRSW--HRLRRHDPGVLRNLPSLLSLPGRIPSCAVVGNS 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,365
Number of Sequences: 37544
Number of extensions: 393570
Number of successful extensions: 1154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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