Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0615
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 32 0.50
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 1.5
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.7
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 3.5
10_08_0486 - 18239351-18239592,18240893-18240984,18241279-182413... 29 3.5
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 3.5
03_02_0520 + 9092020-9092079,9092253-9093047 29 4.7
11_06_0344 + 22540436-22540737,22541304-22543545 28 6.2
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 6.2
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 6.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.2
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 8.2
06_01_0985 - 7646772-7647451,7647957-7648107 28 8.2
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 8.2
01_06_1411 + 37127098-37128279 28 8.2
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 464 LQRNLAIGLRSIPPAMLMPRQL*SVAVVRNTTTFKSSITERA-EKCLTALKARCLTSPVA 640
L + + +R +P + L + V + R K+S++ + C L C S
Sbjct: 276 LTKRSEVPVRILPSSYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEG 335
Query: 641 CGTGFLTSCATWL 679
CG F T CA +L
Sbjct: 336 CGHEFCTKCALYL 348
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -3
Query: 305 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 132
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 131 VPTP 120
+P
Sbjct: 69 QSSP 72
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 536 VAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 652
+ +RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 397 IPAIRNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 415 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 516
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>10_08_0486 -
18239351-18239592,18240893-18240984,18241279-18241364,
18241442-18241643,18241743-18241960,18242524-18242640
Length = 318
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 409 TASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQYHHVQIEYYGTC 588
TASR+ D W + +R T+ D+ + ISG ++ H+ E++ C
Sbjct: 109 TASRSFGEDNGMDYWSDDEDNEKMSRSWSSTSEDSLFNCDAISGNRKRHGHMYFEFFEVC 168
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 348 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 482
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 218 VLDVFSLRDVPAAELLRRWTFSSR 147
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 560 TFKSSITERAEKCLTALKARCLTSP 634
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 334 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 477
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 281 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 147
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -3
Query: 404 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 261
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 269 GYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 147
G F L AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 484 GMFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 218 VLDVFSLRDVPAAELLRRWTFSSR 147
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 241 SSKLSDIPCSMCSASEMSPRPSCSDVG 161
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>01_06_1411 + 37127098-37128279
Length = 393
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 410 LHQGLSLRDRLQTHGVHKLQRNLAIGLRSIPPAMLMPRQL*SVAVVRNT 556
LH SLR L++ H+L+R+ LR++P + +P ++ S AVV N+
Sbjct: 128 LHLDPSLRRALRSW--HRLRRHDPGVLRNLPSLLSLPGRIPSCAVVGNS 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,365
Number of Sequences: 37544
Number of extensions: 393570
Number of successful extensions: 1154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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