Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0615
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   6.8  
At3g30560.1 68416.m03867 hypothetical protein                          27   9.0  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    27   9.0  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   9.0  

>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 551 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 682
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 430 TRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQYHHVQIEYY 579
           T   PDA   + + +P N +  +T+       ++  GRGP    +Q E Y
Sbjct: 151 TSDHPDAKNFRANVRPYNMLFSFTSLGGKVDRSVKKGRGPSMFALQGENY 200


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 451 WCAQTSTKPGNRIAKYTASDAYASTTL 531
           W  QT  KP + I  YT  D Y S+ L
Sbjct: 16  WIPQTPMKPFSPICPYTVEDQYHSSQL 42


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 77  PXDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 190
           P    H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,066
Number of Sequences: 28952
Number of extensions: 279835
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)