BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0615 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 28 6.8 At3g30560.1 68416.m03867 hypothetical protein 27 9.0 At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 27 9.0 At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 9.0 >At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane protein (PEX10) identical to zinc-binding peroxisomal integral membrane protein GI:4337011 from [Arabidopsis thaliana] Length = 381 Score = 27.9 bits (59), Expect = 6.8 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Frame = +2 Query: 551 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 682 N +T S+ TE KC L R + CG F SC W N Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356 >At3g30560.1 68416.m03867 hypothetical protein Length = 1473 Score = 27.5 bits (58), Expect = 9.0 Identities = 14/50 (28%), Positives = 23/50 (46%) Frame = +1 Query: 430 TRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISGRGPQYHHVQIEYY 579 T PDA + + +P N + +T+ ++ GRGP +Q E Y Sbjct: 151 TSDHPDAKNFRANVRPYNMLFSFTSLGGKVDRSVKKGRGPSMFALQGENY 200 >At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family protein (ROS1) similar to DEMETER protein [Arabidopsis thaliana] GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair protein Length = 1393 Score = 27.5 bits (58), Expect = 9.0 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +1 Query: 451 WCAQTSTKPGNRIAKYTASDAYASTTL 531 W QT KP + I YT D Y S+ L Sbjct: 16 WIPQTPMKPFSPICPYTVEDQYHSSQL 42 >At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965; Length = 185 Score = 27.5 bits (58), Expect = 9.0 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +2 Query: 77 PXDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 190 P H H RR + AA A Q PHH T+ G G Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,572,066 Number of Sequences: 28952 Number of extensions: 279835 Number of successful extensions: 854 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 854 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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