Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0614
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0838 - 8185083-8185910 31 1.1
05_01_0078 - 523366-525196,525622-525675,527135-529341 30 1.8
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 30 2.4
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 29 3.2
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 29 4.3
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 5.6
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 29 5.6
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 5.6
02_01_0035 - 220036-221419,222050-222801 29 5.6
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 29 5.6
02_05_0819 - 32014236-32016059 28 7.4
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 28 9.8
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 28 9.8
>08_01_0838 - 8185083-8185910
Length = 275
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 123 GEGSSDERDSGISLGAEYRPQ-----PERHPEEEDAHLKAE 230
G+ SSD RDS + G +RP+ + +EEDA KAE
Sbjct: 158 GDSSSDHRDSSTTCGCHHRPEYADDSDDDDDDEEDAIKKAE 198
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 165 GAEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHE 302
GAE +PE + + + LKA +L + ATLK +++ K HE
Sbjct: 656 GAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIINMKKGIYHE 701
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 93 PGPRSSPSWDGEGSSDERDSGISLGAEYRPQP--ERHPEEEDA 215
P P P+ GEG DE G+ +G RP P E EDA
Sbjct: 80 PRPPPQPAGGGEGEDDEEGGGVMIGPP-RPPPRSSSRGEGEDA 121
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 102 RSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVATLK 266
R+SP+ DG S +R S S + H EEE L + +LA ++A+++
Sbjct: 1074 RNSPTTDGTYSGHKRRSVKSPTKKTLKHKTSHKEEEQDELAGSILKLANKLASVE 1128
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 129 GSSDERDSGISLGAEYRPQPERHPEEEDAHLKA--ELARLATEVATLKNMMHQN 284
G + + SL EY P+ + H + DAH + +LA++ +V +K +M QN
Sbjct: 98 GGKAKNATANSLKREYGPKLKEHMKYCDAHPEEIDKLAKVKAQVTEVKGVMMQN 151
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +3
Query: 27 NLTSATRXVASALLSLQHIKQEPGPRSSPSWDGEGSSDERD 149
+L A + V A LSLQH+ E GP S S D S D
Sbjct: 578 SLIEARKLVTEARLSLQHVDDE-GPADSASDDASQDSGASD 617
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 102 RSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVATLK 266
R+SP+ DG S +R S S + H EEE L + +LA ++A ++
Sbjct: 552 RNSPTTDGTYSGHKRRSVKSPTKKTLKHKTSHKEEEQDELAGSILKLANKLALVE 606
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 69 SLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYR 179
SL+ Q P P SPS SDE D G+ G R
Sbjct: 43 SLRLQAQNPSPAPSPSRRDANPSDEDDDGVGSGGRRR 79
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 120 DGEGSSDERDSGISLGAEYRPQPERHPEEEDAH 218
DG+G DE D G+ +G ++ E D H
Sbjct: 679 DGDGDGDEEDVGVGVGRATDDHDDQVDESHDGH 711
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +3
Query: 96 GPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVATLKNMM 275
GP ++ + +++ ++ IS +++PQPE E++ L L T+ A+ +
Sbjct: 474 GPNTARFYPPFHTTNSKEGSISYPNDHKPQPEARNVTENSRLSGREPTL-TDTASDSFLN 532
Query: 276 HQNKTRAHE 302
++ T HE
Sbjct: 533 PESSTNPHE 541
>02_05_0819 - 32014236-32016059
Length = 607
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 93 PGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATE 251
P P P+ G G+ D+R+ + L +P+ +R E+ + E R+ E
Sbjct: 355 PAPTGVPAGGGRGAVDDREEDMDL---EQPREQRRESREEREARIERDRIREE 404
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +3
Query: 21 ATNLTSATRXVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHP 200
AT A+ A+A K +P P+ P E S + D I + P+PE
Sbjct: 21 ATLDAPASSDAAAAARFRPRAKGKPKPKPKPEPKAEDSKLKADDSIPMSKPEEPKPEAAA 80
Query: 201 EEEDA 215
ED+
Sbjct: 81 PMEDS 85
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 87 QEPGPRSSPSWDGEGSSDERDSGIS-LGAEYRPQPERHPEEEDAHLKAELARLATEVATL 263
Q+P R + S+D +S + L +++ Q PE +DA +A+L R A
Sbjct: 2305 QKPELRRTSSFDRTWEETVAESVANELVTQFQSQSNAPPESQDAPKEAKLVRSARSTREE 2364
Query: 264 KNMMHQNKTR 293
K M N+ +
Sbjct: 2365 KKNMDPNEVK 2374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,663
Number of Sequences: 37544
Number of extensions: 250702
Number of successful extensions: 768
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -