Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0614
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                32   0.47 
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)            31   1.1  
SB_6510| Best HMM Match : Vicilin_N (HMM E-Value=0.44)                 30   1.9  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)                    28   7.6  

>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 84  KQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHP--EEEDAHLKAELARLATEVA 257
           K  PG    P   G+G   +R S +    + +P P + P   ++DA +  EL  + T  +
Sbjct: 318 KPLPGVPGRPGTPGDGRGGQRSSTLGTPGKPKPSPGKPPCRTKKDASIARELRHIKTITS 377

Query: 258 TLKNM 272
           + +N+
Sbjct: 378 SAENL 382


>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
          Length = 365

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 81  IKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEE 209
           IK+EP P   P  + E  ++E +  +   AE  P+PER PE+E
Sbjct: 89  IKKEPEPEPEP--EPEVKAEEPEPEVE--AEPEPEPEREPEKE 127


>SB_6510| Best HMM Match : Vicilin_N (HMM E-Value=0.44)
          Length = 270

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 168 AEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHE 302
           A  R + E+  +EE+  LKAE  + A + A LK    Q K R HE
Sbjct: 134 ARRRAEREKKKKEEEERLKAE--QEAEQEAELKRRAEQEKRRQHE 176


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 168  AEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHE 302
            A  R + E+  +EE+  LKAE  + A + A LK    Q K R HE
Sbjct: 2316 ARRRAEREKKKKEEEERLKAE--QEAEQEAELKRRAEQEKRRQHE 2358


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 69  SLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPER 194
           S + +++E  P   PS DGEG+  + +   S+ AE++ +  R
Sbjct: 786 SRKPLQEEADPDYIPSEDGEGAQQQENETASIAAEFKSEMMR 827


>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
          Length = 638

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +3

Query: 24  TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPE 203
           T+ T++T     A+ ++Q  ++EPG       + + + + +    +     RP P R+  
Sbjct: 232 TSATTSTTGSHQAMTAMQS-EEEPGASMGHRTERQKAKELKQMKRAGLTPLRPPPHRNNM 290

Query: 204 EEDAHLKAELARL 242
           E+DA  KA + +L
Sbjct: 291 EDDADHKARMNKL 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,974
Number of Sequences: 59808
Number of extensions: 281940
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)