Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0614
         (795 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         27   0.88 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         27   0.88 
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    24   6.2  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   6.2  
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    23   8.2  

>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 0.88
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 508 RASLEVRASLFYEYDIQLLGRVTI---GETA*PITAARYHT 395
           RASLE R SLF  YDI    R+       +A P+    YHT
Sbjct: 216 RASLERRDSLFRPYDISKSPRLCSSNGSSSATPLPLHPYHT 256


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 0.88
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 508 RASLEVRASLFYEYDIQLLGRVTI---GETA*PITAARYHT 395
           RASLE R SLF  YDI    R+       +A P+    YHT
Sbjct: 216 RASLERRDSLFRPYDISKSPRLCSSNGSSSATPLPLHPYHT 256


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 102 RSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAEL 233
           RSS +     S +E  +G+S  ++   QPE  P ++ A  + E+
Sbjct: 59  RSSNADSSHSSEEEESAGLSYKSKRSAQPE-GPRDQGATAELEI 101


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 102 RSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAEL 233
           RSS +     S +E  +G+S  ++   QPE  P ++ A  + E+
Sbjct: 59  RSSNADSSHSSEEEESAGLSYKSKRSAQPE-GPRDQGATAELEI 101


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 527 KCVV*GSGVIGGTRVLI 477
           KCVV G G +G T +LI
Sbjct: 8   KCVVVGDGTVGKTCMLI 24


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,317
Number of Sequences: 2352
Number of extensions: 9810
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)