Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0614
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    30   1.7  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.7  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.7  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 90  EPG---PRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVAT 260
           EPG   P+ SP+   +   D+R   +S G     +  R  EEE+   +AE+ +   E   
Sbjct: 276 EPGAEPPQKSPA--PKTFEDKRQDNLSKGQAELERRRRVLEEEEQRRRAEVEKKEREEEA 333

Query: 261 LKNMMHQNKTRAHE 302
            KN   Q K R  E
Sbjct: 334 KKNRERQEKERQAE 347


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 24   TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDG-EGSSDERDSGISLGAEYRPQPERHP 200
            T  T+ TR        L++ KQE   R SPS    E    E  +  ++ +EY  +PE   
Sbjct: 2874 TTTTTVTREFQEEPEELEY-KQEDNSRKSPSSHSQENLVTETTTTTTVTSEYYDEPEHFE 2932

Query: 201  EEE 209
            E+E
Sbjct: 2933 EQE 2935


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 24   TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDG-EGSSDERDSGISLGAEYRPQPERHP 200
            T  T+ TR        L++ KQE   R SPS    E    E  +  ++ +EY  +PE   
Sbjct: 2874 TTTTTVTREFQEEPEELEY-KQEDNSRKSPSSHSQENLVTETTTTTTVTSEYYDEPEHFE 2932

Query: 201  EEE 209
            E+E
Sbjct: 2933 EQE 2935


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +3

Query: 54  ASALLSLQHIKQEPGPRSSPSWDGEGSSDE------RDSGISLGAEYRPQPERHPEEEDA 215
           ++  L  + + Q+P P SS   + EG+ DE       D     G++   +     EEED 
Sbjct: 340 SATALEAKSVSQQPTPESSEEEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPSDEEEEDE 399

Query: 216 HLKAE 230
             + E
Sbjct: 400 ETEEE 404


>Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical
           protein T13H5.6 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 24  TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGIS 161
           T+L S     A+ L   QH++ EP  R +P +D       R SG S
Sbjct: 288 TSLVSFDPKSATLLRIRQHLEAEPSDRDTPDYDMYERLRSRSSGHS 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,445
Number of Sequences: 27780
Number of extensions: 216374
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)