BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0614 (795 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 30 1.7 U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 6.7 U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 6.7 Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 28 8.9 Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical pr... 28 8.9 >AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical protein Y116A8C.36 protein. Length = 1097 Score = 30.3 bits (65), Expect = 1.7 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Frame = +3 Query: 90 EPG---PRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVAT 260 EPG P+ SP+ + D+R +S G + R EEE+ +AE+ + E Sbjct: 276 EPGAEPPQKSPA--PKTFEDKRQDNLSKGQAELERRRRVLEEEEQRRRAEVEKKEREEEA 333 Query: 261 LKNMMHQNKTRAHE 302 KN Q K R E Sbjct: 334 KKNRERQEKERQAE 347 >U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated protein 44, isoform f protein. Length = 6994 Score = 28.3 bits (60), Expect = 6.7 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +3 Query: 24 TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDG-EGSSDERDSGISLGAEYRPQPERHP 200 T T+ TR L++ KQE R SPS E E + ++ +EY +PE Sbjct: 2874 TTTTTVTREFQEEPEELEY-KQEDNSRKSPSSHSQENLVTETTTTTTVTSEYYDEPEHFE 2932 Query: 201 EEE 209 E+E Sbjct: 2933 EQE 2935 >U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin protein. Length = 6994 Score = 28.3 bits (60), Expect = 6.7 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +3 Query: 24 TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDG-EGSSDERDSGISLGAEYRPQPERHP 200 T T+ TR L++ KQE R SPS E E + ++ +EY +PE Sbjct: 2874 TTTTTVTREFQEEPEELEY-KQEDNSRKSPSSHSQENLVTETTTTTTVTSEYYDEPEHFE 2932 Query: 201 EEE 209 E+E Sbjct: 2933 EQE 2935 >Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical protein W07G1.5b protein. Length = 450 Score = 27.9 bits (59), Expect = 8.9 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = +3 Query: 54 ASALLSLQHIKQEPGPRSSPSWDGEGSSDE------RDSGISLGAEYRPQPERHPEEEDA 215 ++ L + + Q+P P SS + EG+ DE D G++ + EEED Sbjct: 340 SATALEAKSVSQQPTPESSEEEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPSDEEEEDE 399 Query: 216 HLKAE 230 + E Sbjct: 400 ETEEE 404 >Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical protein T13H5.6 protein. Length = 475 Score = 27.9 bits (59), Expect = 8.9 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 24 TNLTSATRXVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGIS 161 T+L S A+ L QH++ EP R +P +D R SG S Sbjct: 288 TSLVSFDPKSATLLRIRQHLEAEPSDRDTPDYDMYERLRSRSSGHS 333 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,012,445 Number of Sequences: 27780 Number of extensions: 216374 Number of successful extensions: 596 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 595 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1935274832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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