Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0613
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96242 Cluster: Putative uncharacterized protein PFB074...    36   0.96 
UniRef50_Q22NH4 Cluster: Cation-transporting ATPase; n=1; Tetrah...    36   1.3  
UniRef50_A4T0E2 Cluster: Short-chain dehydrogenase/reductase SDR...    34   3.9  
UniRef50_O16478 Cluster: Serpentine receptor, class t protein 7;...    34   3.9  
UniRef50_UPI00015B4E19 Cluster: PREDICTED: similar to MSL2 prote...    33   6.7  
UniRef50_A4VEL3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_P46567 Cluster: Serpentine receptor class gamma-13; n=1...    33   6.7  
UniRef50_A3J388 Cluster: O-antigen transporter; n=1; Flavobacter...    33   8.9  

>UniRef50_O96242 Cluster: Putative uncharacterized protein PFB0745w;
           n=2; Eukaryota|Rep: Putative uncharacterized protein
           PFB0745w - Plasmodium falciparum (isolate 3D7)
          Length = 1351

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 15/45 (33%), Positives = 30/45 (66%)
 Frame = -3

Query: 377 IVWFKDLYKVFLFKFIFIXNVCVHVLGQNCK*TVVFIYSSLSTVY 243
           I+  KD++ ++LFK +++ N  +H+L  N    VV ++ ++ST+Y
Sbjct: 183 IIRNKDIFNIYLFKCLYLNNQWIHILNYN---MVVSLFLNVSTLY 224


>UniRef50_Q22NH4 Cluster: Cation-transporting ATPase; n=1;
           Tetrahymena thermophila SB210|Rep: Cation-transporting
           ATPase - Tetrahymena thermophila SB210
          Length = 1150

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 395 GTYTFIIVWFKDLYKVFLFKFIFIXNVCVHVLGQNCK*TVVF 270
           G +  ++ WF  L K FL+K ++    C HVL  N   T+VF
Sbjct: 56  GIFLLLLRWFFKLRKTFLYKEVYKIQDCTHVLVLNSDKTLVF 97


>UniRef50_A4T0E2 Cluster: Short-chain dehydrogenase/reductase SDR;
           n=10; Burkholderiaceae|Rep: Short-chain
           dehydrogenase/reductase SDR - Polynucleobacter sp.
           QLW-P1DMWA-1
          Length = 273

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +2

Query: 512 QSIFDINNGKPKGTPAADAGLPSRARVLTQRTGRL----LLYTLTVIAII 649
           Q +F+   G+ +  P+AD+GLPS  ++L Q+   L    L YTL+  A++
Sbjct: 133 QKMFEFQKGRTEKNPSADSGLPSVIQLLDQKLINLNPDYLSYTLSKAALL 182


>UniRef50_O16478 Cluster: Serpentine receptor, class t protein 7;
           n=4; Caenorhabditis elegans|Rep: Serpentine receptor,
           class t protein 7 - Caenorhabditis elegans
          Length = 353

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80  ICIS*YYMYTSYNLLF-FKFCISKVVYYCSRQL*IQFTKLC 199
           +C S  Y+Y SYNLLF F +  S  +Y   RQ+  Q   LC
Sbjct: 208 VCTSTLYLYLSYNLLFKFGYSTSIWLYKTKRQIIFQAVILC 248


>UniRef50_UPI00015B4E19 Cluster: PREDICTED: similar to MSL2 protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to MSL2
           protein - Nasonia vitripennis
          Length = 489

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 559 SGRRAALPRPSTDSTYRKTTALYTNRNRYYSKKIFMEKMLSSNTRSR 699
           SG +  + R +  ST     A+ T +N YY    F +K  SS+TRS+
Sbjct: 303 SGNKITIKRKAATSTADDLEAVLTLKNPYYFFSFFFKKPRSSSTRSK 349


>UniRef50_A4VEL3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 435

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 66  IKRYLYVYHNIICILPIIYFFLNFVFPKLFTIAHVNYKFSSLNF 197
           IK + +  + I C L  I +F+  +F   + +  VNY   SLN+
Sbjct: 325 IKVFKFFQNEIDCFLTYINYFIQEIFKSAYQLNQVNYLLQSLNY 368


>UniRef50_P46567 Cluster: Serpentine receptor class gamma-13; n=1;
           Caenorhabditis elegans|Rep: Serpentine receptor class
           gamma-13 - Caenorhabditis elegans
          Length = 336

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 36  LSKYKKISRTIKRYLYVYHNIICILPIIYFFLNFVFPKL-FTIAHVNYKFSSLNFV 200
           +  Y  +S  +   L++Y  ++C +   YFF   +F K+ FT++H +  F +++ V
Sbjct: 78  MGMYMSLSEILVGRLFIYVTLLCPILAPYFFTPSIFLKIFFTLSHYSQGFKTVSQV 133


>UniRef50_A3J388 Cluster: O-antigen transporter; n=1; Flavobacteria
           bacterium BAL38|Rep: O-antigen transporter -
           Flavobacteria bacterium BAL38
          Length = 419

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 72  RYLYVYHNIICILPIIYFFLNFVFPKLFTIAHVNYKFSSLNFV 200
           +Y  V   I+     I+ F NFVFPK+  +  ++YK    N++
Sbjct: 254 QYRIVEQIIVVFKTYIFLFFNFVFPKICYLIEIDYKRGIKNWI 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,611,220
Number of Sequences: 1657284
Number of extensions: 11242062
Number of successful extensions: 29934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29885
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)