Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0613
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.85 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.0  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   2.6  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    26   6.0  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   6.0  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 526 YQQWQT*RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYYSKK 657
           Y +W+  R+P   +R +   P   S Y +  +    R  YY  +
Sbjct: 12  YSRWKRERSPERSQRRSQSPPGEQSAYHRERSPLRKRGNYYDDR 55


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 578 SRARVLTQRTGRLLLYTLTVIAIIRKKYLWKKCYHL 685
           ++ R L +R G  L  T T++ + +   LW+ CY L
Sbjct: 86  TKTRSLLKRFGSCLDETSTIVLLNQSVSLWEDCYSL 121


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 48  KKISRTIKRYLYV-YHNIICIL--PIIYFFLNFVFPKLFTIAHVNYKFS 185
           K +S+ I  Y ++ +H I+ +L  P     L  V+P +FT A  + K++
Sbjct: 77  KSLSKKIISYHFISFHTIVVLLLLPPFSHLLVLVYPSVFTTAFYHQKWA 125


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  QTYQNIKKYRGLSNDIYMYIIILYVY 108
           Q YQ+   Y+  +N I+ +  +LY+Y
Sbjct: 43  QYYQSFVVYKATANTIFQFSYLLYIY 68


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 568 RAALPRPSTDSTYRKTTALYTNRNRYY 648
           +AA P+P    TY++ T LY   ++ Y
Sbjct: 263 KAAKPKPENKLTYQQLTDLYVELSKKY 289


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +3

Query: 93  NIICILPIIYFFLNFVFPKLFTI 161
           N++ ++P+++FFLN  FP +FT+
Sbjct: 47  NLVALMPLVHFFLN-GFP-VFTV 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,410
Number of Sequences: 5004
Number of extensions: 50418
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)