Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0613
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    29   4.7  
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855...    28   8.2  

>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 54  ISRTIKRYLYVYHNIICI---LPIIYFFLNF 137
           I+ +  +YLYVYH + C+   L  +Y+ L F
Sbjct: 155 ITNSSSKYLYVYHPVDCLTTALSFVYYMLPF 185


>02_05_0338 -
           28084169-28084366,28084414-28085225,28085565-28085595,
           28085638-28086214,28086439-28087145,28087188-28087228,
           28087253-28087366,28087517-28088108
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 568 GVRCGGSFRFAIVDIKDRLVPFLC 497
           G  CGG FRF++ D  ++ V  +C
Sbjct: 329 GYECGGMFRFSLSDFCNKSVNHIC 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,155
Number of Sequences: 37544
Number of extensions: 281163
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)