Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0613
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        28   8.4  
SB_54044| Best HMM Match : PARP (HMM E-Value=0.078)                    28   8.4  

>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 356 YKVFLFKFIFIXNVCVHVLGQNCK*TVVFIYSSLS 252
           +++ L  FI++ N C   L +  + TVVF Y ++S
Sbjct: 50  FRIVLAGFIYLHNRCFQNLMETGESTVVFFYDAIS 84


>SB_54044| Best HMM Match : PARP (HMM E-Value=0.078)
          Length = 489

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 547 RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYYS 651
           RN RSG  +    PST      T+  +TNRN +YS
Sbjct: 161 RNQRSGNHSY---PSTSGLQLYTSICHTNRNSHYS 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,935
Number of Sequences: 59808
Number of extensions: 332539
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)