Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0613
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL121806-13|CAB65886.1|  602|Drosophila melanogaster EG:33C11.3 ...    29   8.0  
AE014298-168|AAF45597.2|  655|Drosophila melanogaster CG3638-PA,...    29   8.0  
AE014298-167|AAN09038.1|  639|Drosophila melanogaster CG3638-PB,...    29   8.0  
AE014298-166|AAN09037.1| 1201|Drosophila melanogaster CG3638-PC,...    29   8.0  
AE014298-165|AAN09036.1| 1404|Drosophila melanogaster CG3638-PD,...    29   8.0  

>AL121806-13|CAB65886.1|  602|Drosophila melanogaster EG:33C11.3
           protein.
          Length = 602

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 547 RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYY 648
           RN  +G R  L  PS+ S++  +TA Y N    Y
Sbjct: 502 RNGSAGLRQGLASPSSQSSHTSSTATYNNGTTSY 535


>AE014298-168|AAF45597.2|  655|Drosophila melanogaster CG3638-PA,
           isoform A protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 547 RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYY 648
           RN  +G R  L  PS+ S++  +TA Y N    Y
Sbjct: 514 RNGSAGLRQGLASPSSQSSHTSSTATYNNGTTSY 547


>AE014298-167|AAN09038.1|  639|Drosophila melanogaster CG3638-PB,
           isoform B protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 547 RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYY 648
           RN  +G R  L  PS+ S++  +TA Y N    Y
Sbjct: 498 RNGSAGLRQGLASPSSQSSHTSSTATYNNGTTSY 531


>AE014298-166|AAN09037.1| 1201|Drosophila melanogaster CG3638-PC,
           isoform C protein.
          Length = 1201

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 547 RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYY 648
           RN  +G R  L  PS+ S++  +TA Y N    Y
Sbjct: 514 RNGSAGLRQGLASPSSQSSHTSSTATYNNGTTSY 547


>AE014298-165|AAN09036.1| 1404|Drosophila melanogaster CG3638-PD,
           isoform D protein.
          Length = 1404

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 547 RNPRSGRRAALPRPSTDSTYRKTTALYTNRNRYY 648
           RN  +G R  L  PS+ S++  +TA Y N    Y
Sbjct: 514 RNGSAGLRQGLASPSSQSSHTSSTATYNNGTTSY 547


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,906,451
Number of Sequences: 53049
Number of extensions: 503255
Number of successful extensions: 1308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)