Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0613
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    34   0.11 
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    32   0.34 
AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine re...    30   1.8  
Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    27   9.8  

>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80  ICIS*YYMYTSYNLLF-FKFCISKVVYYCSRQL*IQFTKLC 199
           +C S  Y+Y SYNLLF F +  S  +Y   RQ+  Q   LC
Sbjct: 208 VCTSTLYLYLSYNLLFKFGYSTSIWLYKTKRQIIFQAVILC 248


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 74  ISICIS*YYMYTSYNLLF-FKFCISKVVYYCSRQL*IQFTKLCI 202
           + IC    Y+Y SY L+F F +  S  +Y   RQ+  Q   LCI
Sbjct: 208 VGICTIILYLYLSYRLIFKFGYSTSMWLYKTKRQIIFQAISLCI 251


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 36  LSKYKKISRTIKRYLYVYHNIICILPIIYFFLNFVFPKL-FTIAHVNYKFSSLNFV 200
           +  Y  +S  +   L++Y  ++C +   YFF   +F K+ FT++H +  F +++ V
Sbjct: 78  MGMYMSLSEILVGRLFIYVTLLCPILAPYFFTPSIFLKIFFTLSHYSQGFKTVSQV 133


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 80  ICIS*YYMYTSYNLLF-FKFCISKVVYYCSRQL*IQFTKLCI 202
           IC    Y+Y SYNLLF   +  S  +Y   RQ+  Q   LC+
Sbjct: 209 ICTGTLYLYLSYNLLFKLGYSTSTWLYKTKRQIIFQAVILCV 250


>AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine
           receptor, class t protein9 protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 80  ICIS*YYMYTSYNLLFFKFCISKVVYYCSRQL*IQFTKLCI 202
           IC S  Y+Y SYNLL FKF  S   +    +L  Q   LC+
Sbjct: 208 ICSSTLYIYLSYNLL-FKFGYSTSTWLYKTKLISQSIILCV 247


>Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical
           protein R53.7b protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 522 LISTMANLKEPPQRTPGCPPAPEY*LNVPEDYCS 623
           L S +A   E P + P  PP PE   +  E+ CS
Sbjct: 450 LRSPLATTDEEPSQEPAMPPTPESNSSSTENVCS 483


>Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical
           protein R53.7a protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 522 LISTMANLKEPPQRTPGCPPAPEY*LNVPEDYCS 623
           L S +A   E P + P  PP PE   +  E+ CS
Sbjct: 422 LRSPLATTDEEPSQEPAMPPTPESNSSSTENVCS 455


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = -1

Query: 460 GQG-RTGN*NFCK---GNYIXIVYSLERIPLLLFGLKIY----IKFSFLNLFSX*TYVSM 305
           G+G R GN   CK   G    I+Y L  IPL+LF LKI+    IK++    +S    V  
Sbjct: 217 GEGWRYGN-LACKTNLGRVATIIYGLIGIPLMLFVLKIFGEHSIKWAQKVRYSIRRCVKR 275

Query: 304 CWVRIVNKR 278
           C+ R   KR
Sbjct: 276 CFRRSKLKR 284


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = -1

Query: 460 GQG-RTGN*NFCK---GNYIXIVYSLERIPLLLFGLKIY----IKFSFLNLFSX*TYVSM 305
           G+G R GN   CK   G    I+Y L  IPL+LF LKI+    IK++    +S    V  
Sbjct: 238 GEGWRYGN-LACKTNLGRVATIIYGLIGIPLMLFVLKIFGEHSIKWAQKVRYSIRRCVKR 296

Query: 304 CWVRIVNKR 278
           C+ R   KR
Sbjct: 297 CFRRSKLKR 305


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = -1

Query: 460 GQG-RTGN*NFCK---GNYIXIVYSLERIPLLLFGLKIY----IKFSFLNLFSX*TYVSM 305
           G+G R GN   CK   G    I+Y L  IPL+LF LKI+    IK++    +S    V  
Sbjct: 262 GEGWRYGN-LACKTNLGRVATIIYGLIGIPLMLFVLKIFGEHSIKWAQKVRYSIRRCVKR 320

Query: 304 CWVRIVNKR 278
           C+ R   KR
Sbjct: 321 CFRRSKLKR 329


>AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical
           protein Y105C5A.11 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 75  YLYVYHNIICILPIIYFFLNFVF 143
           +L+++H I C+L +I FFL  +F
Sbjct: 205 FLHLFHCIPCLLLVIVFFLASIF 227


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80  ICIS*YYMYTSYNLLF-FKFCISKVVYYCSRQL 175
           +C S  Y Y SY+LLF F +  S  +Y   RQ+
Sbjct: 165 LCTSTLYCYISYHLLFNFGYSTSSWLYKSKRQV 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,371,124
Number of Sequences: 27780
Number of extensions: 276994
Number of successful extensions: 797
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)