Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0612
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    40   5e-04
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    38   0.001
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    35   0.014
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    34   0.019
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    34   0.019
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    32   0.10 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    31   0.23 
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    30   0.40 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.71 
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.94 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   2.9  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.9  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.8  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   5.0  

>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNFLLNELV 137
           T CGH++CY C++  L   + CP C   L T     P +L+ E++
Sbjct: 98  THCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS--PAYLVYEIM 140


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 9   CGHSFCYACIIRALDL-HRRCPKCG 80
           CGH FCY CI + ++   RRCP CG
Sbjct: 643 CGHGFCYQCIQKRIETRQRRCPICG 667


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDLHRRCPKCGAP 86
           T C H+FC  CI   L  H  CP C AP
Sbjct: 42  TSCSHTFCSFCIRDYLREHPMCPACRAP 69


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDL--HRRCPKC 77
           T CGH++CYACI+  L L  +  CP C
Sbjct: 211 TDCGHTYCYACIMSRLKLVNNVSCPIC 237


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 9   CGHSFCYACIIRALDLHRRCPKC 77
           CGH+FC  C+++AL    +CP C
Sbjct: 184 CGHTFCGPCLMQALTQSPQCPTC 206


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDLHRRCPKCGA 83
           T CGH FC++CI         CP C A
Sbjct: 269 TECGHIFCWSCINGWTSKKSECPLCRA 295


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNF 119
           T CGH FC  C I        C +CGA       +  NF
Sbjct: 267 TTCGHHFCEQCAITRYRKTPTCIQCGADTKGLFSVDKNF 305


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALD---LHRRCPKC 77
           T CGH FC  CI+ AL      ++CP C
Sbjct: 219 TPCGHIFCNFCILSALGTTAATQKCPVC 246


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALD 53
           +RCGH +C++C++R ++
Sbjct: 228 SRCGHVYCFSCLLRFVE 244


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 9   CGHS-FCYACIIRALDLHRRCPKC 77
           CGH  F Y+CI R +D    CP C
Sbjct: 37  CGHDQFDYSCICRWMDQSLTCPIC 60


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 3    TRCGHSFCYACIIRALDLHRRCPKCGAPL 89
            T CGH +C  C+   L     CP C   L
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 9   CGHSFCYACIIRALDLHRRCPKC 77
           CGH F   C+ + L+ H  CP C
Sbjct: 127 CGHIFGKNCLQKWLENHCTCPLC 149


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 27  YACIIRALDLHRRCPKCGAPLLTXXHIFPN 116
           Y   +  L + +   KCG P LT  ++FPN
Sbjct: 233 YILKLLGLKVPKDTSKCGQPTLTDQYLFPN 262


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDL-----HRRCPKCGAPL 89
           +RC H+FC  C+   ++      +  CP C  PL
Sbjct: 724 SRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPL 757


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 9   CGHSFCYACIIRALDLHR--RCPKCGAP 86
           CGH+FC  C+    + H+   CP+C  P
Sbjct: 655 CGHAFCSNCMEPFYE-HKTSTCPQCETP 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,847
Number of Sequences: 5004
Number of extensions: 28475
Number of successful extensions: 81
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)