Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0612
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43402| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 42 7e-04
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 38 0.009
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 38 0.011
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 38 0.011
SB_56584| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 36 0.027
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 36 0.027
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 34 0.14
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 33 0.19
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 33 0.19
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 33 0.33
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 31 1.3
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 31 1.3
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 30 2.3
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 29 4.0
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 28 7.0
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04) 28 7.0
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 28 7.0
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 28 7.0
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7) 28 9.3
SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 28 9.3
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 28 9.3
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_43402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +3
Query: 24 CYACIIRALDLHRRCPKCGAPLLTXXHIFPNFLLNELVTK 143
CY CI R+L RCPKC + IFPNFLLNEL+ K
Sbjct: 43 CYHCISRSLTESNRCPKCNFVIEKADQIFPNFLLNELIQK 82
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPL 89
CGHSFC C+ R+LD CP C APL
Sbjct: 345 CGHSFCRDCLYRSLDHRVECPCCRAPL 371
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNFLLNELVTK 143
CGH++C AC I+ + C KCG +T N LL +++K
Sbjct: 37 CGHTYCLAC-IKDEFTGKNCKKCGFK-ITEESNSVNILLCNIISK 79
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNFLLNELVTK 143
T CGH FC AC+ R+LD CP C + L + LL K
Sbjct: 392 TPCGHVFCRACLNRSLDHRPGCPICRSSLTQNVTVAIEMLLKTFFPK 438
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPL 89
C HSFC CI+R L+ RCP C A +
Sbjct: 64 CLHSFCRCCIVRYLETSYRCPVCDAEI 90
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPL 89
C HSFC CI+R L+ RCP C A +
Sbjct: 32 CLHSFCRCCIVRYLETSYRCPVCDAEI 58
>SB_56584| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 158
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL-HRRCPKCGA 83
T+C H FCY C+ D R+CPKC A
Sbjct: 119 TKCFHVFCYECLKTRYDTRQRKCPKCNA 146
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL-HRRCPKCGA 83
T+C H FCY C+ D R+CPKC A
Sbjct: 367 TKCFHVFCYECLKTRYDTRQRKCPKCNA 394
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALD---LHRRCPKCGAPL 89
TRC H FC C+ ++ L RCP C AP+
Sbjct: 78 TRCAHVFCTGCLTDVIENEGLAPRCPMCRAPV 109
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAP 86
CGH+FC CI A + CP C P
Sbjct: 694 CGHTFCRPCITEASKSSKLCPTCRDP 719
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAP 86
CGH+FC CI A + CP C P
Sbjct: 769 CGHTFCRPCITEASKSSKLCPTCRDP 794
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAP 86
CG+ FCY CI R L H CP P
Sbjct: 1217 CGYVFCYPCIYRYLGQHGCCPVTHLP 1242
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 32.7 bits (71), Expect = 0.33
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAP 86
CGH +C C+ R L+ + CP C P
Sbjct: 280 CGHKYCEPCLSRWLENNTTCPICRKP 305
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPL---LTXXHIFPNFLLNELVTK 143
C HSFC +CI+ L CP C + +I P+ +L ++V K
Sbjct: 1382 CLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPFLNIRPDCVLQDIVYK 1429
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 9 CGHSFCYACI-IRALDLHRRCPKCGAPLLTXXHIFPNFLLNELV 137
CG S+C CI L+ + CP CGA ++ + N L + V
Sbjct: 75 CGTSYCDECIRTYLLENEQECPTCGAESVSPDSLIINKQLRQAV 118
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPL 89
CGH FC+ CI R+C C P+
Sbjct: 86 CGHMFCFLCIKGVALRSRKCAICRQPI 112
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T CGH C C + H CP CG
Sbjct: 31 TGCGHVLCTKCYNKRSKKHLGCPLCG 56
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHR---RCPKC 77
CGH++C +CII+ L + CP+C
Sbjct: 410 CGHTYCDSCIIKLSRLQKTQVACPEC 435
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
CGH C C + L RCP C
Sbjct: 447 CGHRVCTKCYTKLLSSSARCPGC 469
>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRR---CP--KCGAPL-LTXXHIFP-NFLLNELVT 140
C HSFC C+ +++ R CP +C P+ FP NF +N ++T
Sbjct: 32 CLHSFCQNCLDKSIRSQERVLVCPTCQCSVPVPAKGIEAFPVNFFINNMLT 82
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH--RRCPKCGAPLLT 95
T CGHSFC +C+ L + CP C + +L+
Sbjct: 31 TICGHSFCESCLETWLSRPEVQSCPSCRSHVLS 63
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T+C H FC AC ++ + +C CG
Sbjct: 258 TKCLHYFCEACALQHYKKNSKCFVCG 283
>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
Length = 444
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 566 STLYYXRLRVXIINPIKNMYLXXTDVYRXXKHGCPRPVPCDFL 694
+T YY L++ I N + +M L T Y GC C+ L
Sbjct: 30 NTTYYLTLQLAIANTLASMSLQSTSTYSSAHDGCHVVNECNTL 72
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGA 83
C H FC CI D + CP C A
Sbjct: 499 CKHIFCEDCISLWFDREQTCPMCRA 523
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPK 74
C HS+C AC++ L + CP+
Sbjct: 33 CEHSYCSACVLGWLTHYNTCPE 54
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +3
Query: 9 CGHSFCYACIIRALDL---HRRCPKCGA 83
CGH FC+ C+ R L+ CP C A
Sbjct: 78 CGHLFCWPCLHRWLETRPNRSMCPVCKA 105
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 3 TRCGHSFCYACII 41
T CGH+FC ACI+
Sbjct: 207 TSCGHTFCQACIM 219
>SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)
Length = 573
Score = 27.9 bits (59), Expect = 9.3
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 554 TCPHSTLYYXRLRVXIINPIKNMY 625
TCP LY+ +++ I++P++ +Y
Sbjct: 456 TCPLEALYFVMVKIRILSPLEALY 479
>SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCG 80
C HSFC +C + +CP+CG
Sbjct: 121 CKHSFCLSCAEKGAG---KCPRCG 141
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL---HRRCPKCGAPLLT-XXHIFPNFLLNELVT 140
T C H FC CI LD CP C A + H P L N L +
Sbjct: 173 TPCDHYFCVLCICEWLDQTYNKSGCPVCKASISPGVLHKIPRVLGNTLAS 222
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL---HRRCPKCGAPLLT-XXHIFPNFLLNELVT 140
T C H FC CI LD CP C A + H P L N L +
Sbjct: 47 TPCDHYFCVLCICEWLDQTYNKSGCPVCKASISPGVLHKIPRVLGNTLAS 96
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL---HRRCPKCGAPLLT-XXHIFPNFLLNELVT 140
T C H FC CI LD CP C A + H P L N L +
Sbjct: 173 TPCDHYFCVLCICEWLDQTYNKSGCPVCKASISPGVLHKIPRVLGNTLAS 222
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCP 71
T CGH FC C++ + + CP
Sbjct: 70 TTCGHVFCSQCLVHWIAENGTCP 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,115
Number of Sequences: 59808
Number of extensions: 236909
Number of successful extensions: 633
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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