BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0612 (750 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U02588-1|AAA18901.1| 110|Anopheles gambiae translation initiati... 49 1e-07 DQ230894-1|ABD94313.1| 315|Anopheles gambiae zinc finger protei... 28 0.35 DQ230893-1|ABD94311.1| 315|Anopheles gambiae zinc finger protei... 28 0.35 AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote... 25 3.3 >U02588-1|AAA18901.1| 110|Anopheles gambiae translation initiation factor protein. Length = 110 Score = 49.2 bits (112), Expect = 1e-07 Identities = 22/34 (64%), Positives = 25/34 (73%) Frame = +1 Query: 430 GVLKELRTGAVGNICQWLTKSGLXXPEQLKVHGF 531 G + +L+ NICQWLTKSGL PEQLKVHGF Sbjct: 77 GEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110 >DQ230894-1|ABD94313.1| 315|Anopheles gambiae zinc finger protein 183 protein. Length = 315 Score = 27.9 bits (59), Expect = 0.35 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +3 Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80 T+C H FC C + RC CG Sbjct: 260 TKCKHYFCERCALAQYKKSSRCAICG 285 >DQ230893-1|ABD94311.1| 315|Anopheles gambiae zinc finger protein 183 protein. Length = 315 Score = 27.9 bits (59), Expect = 0.35 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +3 Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80 T+C H FC C + RC CG Sbjct: 260 TKCKHYFCERCALAQYKKSSRCAICG 285 >AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein protein. Length = 1645 Score = 24.6 bits (51), Expect = 3.3 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +2 Query: 11 RPLVLLRVHHPRARPAPALSQVRSAPTHXXTHLPQ--LPAQ 127 RPLV R PR PAPA+ + T T LP PAQ Sbjct: 1091 RPLVSARYGTPRIGPAPAVEPAKK--TLVATILPNSAKPAQ 1129 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 541,805 Number of Sequences: 2352 Number of extensions: 8295 Number of successful extensions: 15 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15 length of database: 563,979 effective HSP length: 63 effective length of database: 415,803 effective search space used: 77339358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -