Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0612
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02588-1|AAA18901.1|  110|Anopheles gambiae translation initiati...    49   1e-07
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    28   0.35 
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    28   0.35 
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    25   3.3  

>U02588-1|AAA18901.1|  110|Anopheles gambiae translation initiation
           factor protein.
          Length = 110

 Score = 49.2 bits (112), Expect = 1e-07
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = +1

Query: 430 GVLKELRTGAVGNICQWLTKSGLXXPEQLKVHGF 531
           G + +L+     NICQWLTKSGL  PEQLKVHGF
Sbjct: 77  GEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDLHRRCPKCG 80
           T+C H FC  C +       RC  CG
Sbjct: 260 TKCKHYFCERCALAQYKKSSRCAICG 285


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 3   TRCGHSFCYACIIRALDLHRRCPKCG 80
           T+C H FC  C +       RC  CG
Sbjct: 260 TKCKHYFCERCALAQYKKSSRCAICG 285


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 11   RPLVLLRVHHPRARPAPALSQVRSAPTHXXTHLPQ--LPAQ 127
            RPLV  R   PR  PAPA+   +   T   T LP    PAQ
Sbjct: 1091 RPLVSARYGTPRIGPAPAVEPAKK--TLVATILPNSAKPAQ 1129


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,805
Number of Sequences: 2352
Number of extensions: 8295
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)