Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0612
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 54 1e-07
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 38 0.007
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 37 0.012
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 36 0.038
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 36 0.038
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 36 0.038
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 36 0.038
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 36 0.038
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 34 0.12
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 34 0.12
At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa... 33 0.20
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 33 0.20
At4g23450.1 68417.m03380 zinc finger (C3HC4-type RING finger) fa... 33 0.20
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa... 33 0.27
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 33 0.27
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 32 0.35
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 32 0.47
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 32 0.47
At1g20823.1 68414.m02608 zinc finger (C3HC4-type RING finger) fa... 31 0.62
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 31 1.1
At5g15790.2 68418.m01847 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g15790.1 68418.m01846 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At3g02290.2 68416.m00211 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At3g02290.1 68416.m00210 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g76410.1 68414.m08881 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g38895.1 68418.m04704 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 30 1.9
At3g03550.1 68416.m00357 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa... 30 1.9
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 2.5
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At3g19950.1 68416.m02525 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing... 29 2.5
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At5g01880.1 68418.m00107 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At4g00335.2 68417.m00044 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At4g00335.1 68417.m00043 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr... 28 5.8
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At5g41350.1 68418.m05025 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 28 7.6
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 28 7.6
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 28 7.6
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 28 7.6
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/98 (34%), Positives = 46/98 (46%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNFLLNELVTKXXXXXXXXXXXXX 182
T CGHSFCY CII L CP C + LT ++PNFLL++L+ K
Sbjct: 65 TACGHSFCYMCIITHLRNKSDCP-CCSQHLTNNQLYPNFLLDKLLKKTSARHVSKTASPL 123
Query: 183 XXXXXXLRSLLAAESRHLDLTEVDSMLELLNRRKILLE 296
L+ + + EVD++L LL RK +E
Sbjct: 124 DQFREALQ-----RGCDVSIKEVDNLLTLLAERKRKME 156
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T+CGH FC CI AL L +CP C
Sbjct: 140 TKCGHIFCKKCIKNALSLQAKCPTC 164
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL-LTXXHIFPNFLLNELVTK 143
T CGH+FC +C+ +++D +CP C + +T + LN ++ K
Sbjct: 209 TPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAVSVTLNNIIEK 256
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL-LTXXHIFPNFLLNELVTK 143
T CGH+FC +C+ +++D +CP C + +T + LN ++ K
Sbjct: 209 TPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAVSVTLNNIIEK 256
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL-LTXXHIFPNFLLNELVTK 143
T CGH+FC +C+ +++D +CP C + +T + LN ++ K
Sbjct: 209 TPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAVSVTLNNIIEK 256
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL-LTXXHIFPNFLLNELVTK 143
T CGH+FC +C+ +++D +CP C + +T + LN ++ K
Sbjct: 209 TPCGHTFCRSCLFQSMDRGNKCPLCRTVIFMTPRTCAVSVTLNNIIEK 256
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDL-HRRCPKCG 80
+C H FC CI R+L++ HR+CP CG
Sbjct: 345 KCYHLFCQQCIQRSLEIRHRKCPGCG 370
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALD-LHRRCPKC 77
T CGHSFC C+ A D R+CPKC
Sbjct: 737 TTCGHSFCKKCLRSAADKCGRKCPKC 762
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 35.5 bits (78), Expect = 0.038
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T+CGH FC CI A+ +CP C
Sbjct: 161 TKCGHIFCKGCIKMAISRQGKCPTC 185
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 35.5 bits (78), Expect = 0.038
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T+CGH FC CI A+ +CP C
Sbjct: 161 TKCGHIFCKGCIKMAISRQGKCPTC 185
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 35.5 bits (78), Expect = 0.038
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T+CGH FC CI A+ +CP C
Sbjct: 161 TKCGHIFCKGCIKMAISRQGKCPTC 185
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 35.5 bits (78), Expect = 0.038
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAP 86
C H FC ACI++++ + CP C P
Sbjct: 366 CNHVFCNACIVKSMKMDATCPVCKIP 391
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 35.5 bits (78), Expect = 0.038
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAP 86
T CGH FC++CI+ + + CP C P
Sbjct: 340 TPCGHVFCWSCIMEWCNEKQECPLCRTP 367
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHR-RCPKCGAPLLTXXHIF 110
CGH+FC C R L L+R CP C P++ IF
Sbjct: 181 CGHTFCRVC-SRELWLNRGSCPLCNRPIIEILDIF 214
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH---RRCPKCGA 83
T CGH FC+ C+ + L LH + CP C A
Sbjct: 36 TLCGHLFCWPCLYKWLHLHSQSKDCPVCKA 65
>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
CGH F CI L H CP C +P+L
Sbjct: 157 CGHGFHVECIDMWLSSHSTCPLCRSPVL 184
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHR-RCPKCGAPL 89
TRC H FC ACI++ L + CP C L
Sbjct: 629 TRCAHIFCRACILQTLQRSKPLCPLCRGSL 658
>At4g23450.1 68417.m03380 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 153
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLL 92
T+CGH F ACI+ ++ CP C L+
Sbjct: 120 TKCGHDFHLACILAWMERSEACPVCDKELV 149
>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 301
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLL 92
+C H+F CI L H+ CP C AP+L
Sbjct: 153 KCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH---RRCPKCGA 83
T CGH FC+ C+ R L H + CP C A
Sbjct: 41 TLCGHLFCWPCLYRWLHHHSHSQECPVCKA 70
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) family
protein / pentatricopeptide (PPR) repeat-containing
protein contains Pfam domains PF01535: PPR repeat and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1208
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLL 92
+C H+F CI R L H CP C A ++
Sbjct: 1071 KCNHTFHVVCIDRWLKSHSNCPLCRAKII 1099
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRR---CPKCGA 83
T CGH FC+ C+ + L H + CP C A
Sbjct: 32 TLCGHLFCWPCLYKWLHYHSKSNHCPVCKA 61
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 21 FCYACIIRALDLHRRCPKCGAPL 89
FC C +DLHR CPKC L
Sbjct: 321 FCNHCATSIVDLHRSCPKCSYEL 343
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIF 110
T CGH+FC C + CP C + +L IF
Sbjct: 325 TPCGHTFCKLCSKELMAQKGHCPVCSSFVLEFLEIF 360
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H FC+ CI+ + RCP C
Sbjct: 432 CSHYFCFTCIMEWSKVESRCPLC 454
>At1g20823.1 68414.m02608 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 197
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+CGH F ACI L H CP C
Sbjct: 129 QCGHGFHVACIDTWLGSHSSCPSC 152
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 TRCGHSFCYACIIRAL---------DLHRRCPKC 77
T CGH FC+ CI++ L D +RCP C
Sbjct: 258 TSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLC 291
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL 89
T C H F C+ R +D+ CP C PL
Sbjct: 528 TPCEHIFHSGCLQRWMDIKMECPTCRRPL 556
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL 89
T C H F C+ R +D+ CP C PL
Sbjct: 528 TPCEHIFHSGCLQRWMDIKMECPTCRRPL 556
>At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 251
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLL-TXXHIFPNFLLNELVT 140
+C H F CI + L H CPKC L+ T I +F + VT
Sbjct: 153 KCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVT 198
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F CI+ L+LH CP C
Sbjct: 277 CKHKFHVRCIVPWLELHSSCPVC 299
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGA 83
RC H FC C+ + R CP C A
Sbjct: 379 RCKHMFCEDCVSEWFERERTCPLCRA 404
>At4g33565.1 68417.m04770 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLL 92
+C H+F CI L H CP C AP++
Sbjct: 72 KCKHAFHLYCIDTWLRSHTNCPLCRAPIV 100
>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F CI+ L+LH CP C
Sbjct: 259 CKHKFHIRCIVPWLELHSSCPVC 281
>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F CI+ L+LH CP C
Sbjct: 259 CKHKFHIRCIVPWLELHSSCPVC 281
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 11/36 (30%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL-----------HRRCPKC 77
T CGH FC+ CI + LD+ HR+CP C
Sbjct: 61 TLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVC 96
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 11/36 (30%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL-----------HRRCPKC 77
T CGH FC+ CI + LD+ HR+CP C
Sbjct: 61 TLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVC 96
>At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 220
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H F CI + L H CPKC
Sbjct: 148 KCNHGFHLRCIDKWLTQHMTCPKC 171
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T C H +C ACI + R CP C
Sbjct: 56 TVCKHGYCLACIRKWSSFKRNCPLC 80
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 21 FCYACIIRALDLHRRCPKCGAPL 89
+C C +DLHR CPKC L
Sbjct: 337 YCDHCATSIVDLHRSCPKCSYEL 359
>At5g15790.2 68418.m01847 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 232
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T+C H F +CI ++ CP CG
Sbjct: 198 TKCSHHFHLSCIYEWMERSENCPVCG 223
>At5g15790.1 68418.m01846 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 232
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T+C H F +CI ++ CP CG
Sbjct: 198 TKCSHHFHLSCIYEWMERSENCPVCG 223
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHR-RCPKCGAPLLTXXHIF 110
CGH+FC C R L + R CP C +L IF
Sbjct: 232 CGHTFCRLC-SRELWVQRGNCPLCNTAILQVLDIF 265
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHR-RCPKCGAPLLTXXHIF 110
CGH+FC C R L + R CP C +L IF
Sbjct: 271 CGHTFCRLC-SRELWVQRGNCPLCNTAILQVLDIF 304
>At3g02290.2 68416.m00211 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger motif, C3HC4 type
(RING finger)
Length = 231
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T+C H F +CI ++ CP CG
Sbjct: 197 TKCSHHFHLSCIYEWMERSENCPVCG 222
>At3g02290.1 68416.m00210 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger motif, C3HC4 type
(RING finger)
Length = 231
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T+C H F +CI ++ CP CG
Sbjct: 197 TKCSHHFHLSCIYEWMERSENCPVCG 222
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH--RRCPKC 77
T CGH +C++C+ + L + + CP C
Sbjct: 154 TNCGHLYCWSCLYQWLQVSEAKECPVC 180
>At1g76410.1 68414.m08881 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+CGH F +CI L H CP C
Sbjct: 122 QCGHGFHVSCIDTWLGSHSSCPSC 145
>At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 225
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H F CI + L H CPKC
Sbjct: 153 KCNHGFHVRCIDKWLQHHLTCPKC 176
>At5g38895.1 68418.m04704 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 221
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCG 80
T+C H F +CI ++ CP CG
Sbjct: 185 TKCSHHFHLSCIYEWMERSETCPVCG 210
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1016
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNFLLNE 131
C F Y C LH +C PL+ H+ P FL ++
Sbjct: 830 CTTGFFYECSKEDFQLHVQCANLSEPLVHESHMHPLFLTSK 870
>At3g03550.1 68416.m00357 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger domain, C3HC4 type
(RING finger) 152633.
Length = 356
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLLT 95
+C H+F CI L H CP C A ++T
Sbjct: 177 KCNHAFHVPCIDTWLKSHSNCPLCRAFIVT 206
>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H F CI + L H CPKC
Sbjct: 154 KCHHGFHVRCIDKWLQQHLTCPKC 177
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNFL 122
C F Y C LH +C PL+ H+ P FL
Sbjct: 1500 CTTGFFYECSKEDFQLHVQCANVSEPLVHESHMHPLFL 1537
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHR-RCPKCGAPLLTXXHIF 110
CGH+FC C R L + R CP C +L +F
Sbjct: 217 CGHTFCRLC-SRELWVQRGNCPLCNTTILEVLDLF 250
>At3g19950.1 68416.m02525 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPN 116
C H F C++ L+LH CP C L T + N
Sbjct: 234 CKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYEN 269
>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
protein similar to SP|O00623 Peroxisome assembly protein
12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
{Homo sapiens}; contains Pfam profile PF04757: Pex2 /
Pex12 amino terminal region
Length = 393
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCP 71
T G FCY+C+ + + ++RCP
Sbjct: 353 TVSGFVFCYSCVFKYVSKYKRCP 375
>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
CGH + CI + L + CP C +P L
Sbjct: 511 CGHDYHGRCIKKWLSMKNSCPICKSPAL 538
>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
CGH + CI + L + CP C +P L
Sbjct: 511 CGHDYHGRCIKKWLSMKNSCPICKSPAL 538
>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); similar to GI:4928397
from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
579-590 (1999))
Length = 413
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGA 83
+C H+F +CI L H CP C A
Sbjct: 195 KCNHAFHISCIDTWLSSHTNCPLCRA 220
>At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 353
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H+F C+ LD H CP C
Sbjct: 110 KCKHAFHVECVDTWLDAHSTCPLC 133
>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
family protein zinc finger protein, Arabidopsis
thaliana, gb:L76926
Length = 225
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
CGH+F CI L H CP C L+
Sbjct: 116 CGHTFHMECIDLWLTSHTTCPLCRLSLI 143
>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
family protein RING-H2 finger protein RHA1a, Arabidopsis
thaliana,AF078683
Length = 236
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
CGH+F CI L H CP C L+
Sbjct: 130 CGHTFHMECIDLWLTSHTTCPLCRLSLI 157
>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 348
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 6 RCGHSFCYACIIRA 47
RCGH FCY C ++A
Sbjct: 283 RCGHKFCYRCGVQA 296
>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 227
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPL 89
+CGHSF CI CP C AP+
Sbjct: 126 KCGHSFHVDCIDTWFRSRSTCPLCRAPV 153
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1280
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
C H CY CI R L +RC C A ++
Sbjct: 1232 CSHRSCYGCITRHLLNCQRCFFCNATVI 1259
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 9 CGHSFCYACIIRALD--LHRR----CPKCGAPLLTXXHI 107
CGH FCY+CI + D + R CP C + +T I
Sbjct: 316 CGHRFCYSCIQKWADRLVSERKKTTCPLCKSNFITITKI 354
>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 272
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
CGH F + CI L + +CP C
Sbjct: 245 CGHDFHFGCIKNWLMVTNKCPLC 267
>At5g01880.1 68418.m00107 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLL 92
C HSF +CI L H CP C L+
Sbjct: 124 CNHSFHMSCIDTWLVSHSSCPNCRHSLI 151
>At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 386
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H+F CI + L+ H CP C
Sbjct: 95 KCRHAFHIGCIDQWLEQHATCPLC 118
>At4g00335.2 68417.m00044 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 190
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T+C H F +C++ ++ RCP C
Sbjct: 155 TKCEHEFHLSCLLEWIERSDRCPIC 179
>At4g00335.1 68417.m00043 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 190
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T+C H F +C++ ++ RCP C
Sbjct: 155 TKCEHEFHLSCLLEWIERSDRCPIC 179
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH--RRCPKC 77
T CGH +C+ C+ + L + + CP C
Sbjct: 152 TCCGHLYCWPCLYQWLQISDAKECPVC 178
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH--RRCPKC 77
T CGH +C+ C+ + L + + CP C
Sbjct: 152 TCCGHLYCWPCLYQWLQISDAKECPVC 178
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLH--RRCPKC 77
T CGH +C+ C+ + L + + CP C
Sbjct: 152 TCCGHLYCWPCLYQWLQISDAKECPVC 178
>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 315
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F C++ L+LH CP C
Sbjct: 243 CKHKFHSDCLLPWLELHSSCPVC 265
>At2g20030.1 68415.m02341 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 390
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H+F CI + L+ H CP C
Sbjct: 142 KCRHAFHIGCIDQWLEQHATCPLC 165
>At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL 89
T+C H F CI R L RCP C L
Sbjct: 146 TKCNHIFYGTCISRYLLHTPRCPVCSVEL 174
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F C++ L+LH CP C
Sbjct: 241 CTHKFHSDCLLPWLELHSSCPVC 263
>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 362
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGA 83
+C H+F CI L H CP C A
Sbjct: 160 KCNHAFHLPCIDTWLKSHSNCPLCRA 185
>At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRR--CPKCGAP 86
C H++C CI+R + CP+C P
Sbjct: 61 CEHAYCVTCILRWASYKEKPTCPQCKLP 88
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLLT 95
+C H+F CI L H CP C + LL+
Sbjct: 152 KCSHAFHMDCIDTWLLSHSTCPLCRSSLLS 181
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 6 RCGHSFCYAC 35
RCGH FCY+C
Sbjct: 397 RCGHEFCYSC 406
>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
protein, Homo sapiens, PIR:JN0717
Length = 405
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPL 89
C H FC C+ R D CP CGA +
Sbjct: 124 CTHVFCKVCLTRFKD----CPLCGADI 146
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H+F CI + L L+ +CP+C
Sbjct: 253 CAHNFHVECIDQWLRLNVKCPRC 275
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLLT 95
+C H+F CI L H CP C + LL+
Sbjct: 144 KCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKC 77
+C H + +CI+ L++H CP C
Sbjct: 155 KCLHLYHSSCIVSWLNIHNTCPIC 178
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 6 RCGHSFCYACIIRALD---LHRRCPKC 77
+C H FC+ C+ + ++ LH PKC
Sbjct: 318 KCRHRFCFQCVKQHVEVKLLHGMAPKC 344
>At5g41350.1 68418.m05025 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 212
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 6 RCGHSFCYACIIRALDLHRRCPKCGAPLL 92
+C H F ACI+ ++ CP C ++
Sbjct: 178 KCDHHFHLACILEWMERSETCPVCNKEMV 206
>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKCGAPLLTXXHIFPNF 119
C H+F C+ LD H CP C L T + N+
Sbjct: 248 CKHTFHPPCLKPWLDEHNSCPICRHELPTDDQKYENW 284
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLL 92
T+C H FC C ++ +++C C P +
Sbjct: 325 TKCKHYFCEHCALKHHTKNKKCFVCNQPTM 354
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLL 92
T+C H FC C ++ +++C C P +
Sbjct: 325 TKCKHYFCEHCALKHHTKNKKCFVCNQPTM 354
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
CGH F AC+ + L L CP C
Sbjct: 637 CGHEFHTACVKQWLMLKNLCPIC 659
>At4g28370.1 68417.m04061 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKC 77
T C H F C+ R +D+ CP C
Sbjct: 435 TPCEHFFHSGCLQRWMDIKMECPTC 459
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F CI + L ++ RCP C
Sbjct: 356 CNHHFHCTCIDKWLHINSRCPLC 378
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 3 TRCGHSFCYACII 41
T CGH FCY C++
Sbjct: 764 TLCGHIFCYECVL 776
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDL-HRRCPKCGA 83
T+C H FC C+ + ++CP C A
Sbjct: 839 TKCYHLFCNPCVQKLTGTRQKKCPTCSA 866
>At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPL 89
T C H F CI +LH+ CP C L
Sbjct: 120 TVCRHPFHSNCIDLWFELHKTCPVCRCEL 148
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 6 RCGHSFCYAC 35
RCGH FCY C
Sbjct: 333 RCGHEFCYGC 342
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 6 RCGHSFCYAC 35
RCGH+FCY C
Sbjct: 340 RCGHTFCYQC 349
>At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
CGHSF CI + L CP C
Sbjct: 121 CGHSFHVECIDKWLVSRSSCPSC 143
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
C H F CI++ L ++ CP C
Sbjct: 310 CNHHFHSTCIVKWLKMNATCPLC 332
>At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 106
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 9 CGHSFCYACIIRALDLHRRCPKC 77
CGH F C+++ + + CP C
Sbjct: 77 CGHDFDDECVLKWFETNHSCPLC 99
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 3 TRCGHSFCYACIIRALDLHRRCPKCGAPLL 92
T+C H FC C ++ +++C C P +
Sbjct: 290 TKCKHYFCEHCALKHHTKNKKCFVCNQPTM 319
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,202
Number of Sequences: 28952
Number of extensions: 160410
Number of successful extensions: 713
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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