Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0611
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  88   6e-18
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   7e-16
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         57   1e-08
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   3e-07
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   2.9  
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)                      27   8.8  

>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 55/154 (35%), Positives = 79/154 (51%)
 Frame = +2

Query: 83  QKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGV 262
           Q +    + E  + +   Y RQ+ + G ++ K +  + VLI GL GLG EIAKNV+L GV
Sbjct: 42  QSVRDEGQAEKMDIDEGLYSRQLYVLGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGV 101

Query: 263 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442
           KSV L D   ++  DL SQF      +G NRAE S  R   LN  V ++ +T+    L +
Sbjct: 102 KSVTLHDTGAVELSDLTSQFFLNKKDVGKNRAEVSHPRIAELNTYVSMSVNTQ---KLTE 158

Query: 443 SFFTEFDVVCATGLKQDQFXRINNACRDSNKKFI 544
            F  +F VV  T    ++   I++ C     K I
Sbjct: 159 EFINKFQVVVLTESSLEEQLWISDFCHSKGIKLI 192



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +2

Query: 134 QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS-----VCLLDNEKLK 298
           +YD QI ++G + QK L   K  ++G   +G E  KN  + G+ S     +   D + ++
Sbjct: 324 RYDGQIAVFGSEFQKKLGQQKYFVVGAGAIGCEHLKNFAMMGLGSGEGGHIYTTDMDTIE 383

Query: 299 QIDLYSQFLCPP 334
           + +L  QFL  P
Sbjct: 384 KSNLNRQFLFRP 395


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 39/97 (40%), Positives = 53/97 (54%)
 Frame = +2

Query: 275 LLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFT 454
           +LDN  + + D  SQFL P + +G NRAE SL R + LNPMV V++    +    D+F  
Sbjct: 1   MLDNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLD 60

Query: 455 EFDVVCATGLKQDQFXRINNACRDSNKKFICGRRLGY 565
           +FDVV ATG   D    ++  CR  N KF      G+
Sbjct: 61  DFDVVVATGCSSDILANLDERCRAKNIKFFASDVFGF 97



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 546 AGDVWGTYGYMFSDL 590
           A DV+G YGYMF+DL
Sbjct: 91  ASDVFGFYGYMFADL 105


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
 Frame = +2

Query: 101 NEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLL 280
           N+VE+ ++    Y RQ  + G  + + +  A V + G+ GLG EIAKN+ L G+KS+ L 
Sbjct: 3   NKVEIDDS---LYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLH 59

Query: 281 DNEKLKQIDLYSQFLCPPDKI--GVNRAEGSLERXRGLNPMVDVTSHT 418
           D       DL SQF    D +    NRA  S  R   LNP V V + T
Sbjct: 60  DTRAASMADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHTQT 107


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
 Frame = +2

Query: 191 AKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 370
           +K+L++G  G+G E+ KN++LTG K++ L+D + +   +L  QFL     +G ++A+ + 
Sbjct: 24  SKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKAKVAR 83

Query: 371 ERXRGLNPMVDVTSHTKGVXXLPD---SFFTEFDVVCATGLKQDQFXRINNACRDSNKKF 541
           E     NP   + +    +   P+    +F +FDVV      +     +N  C  ++   
Sbjct: 84  ESALRFNPDAKIVAIHDNITS-PEYGIDYFKQFDVVMNALDNRAARNHVNRMCLAADVPL 142

Query: 542 ICGRRLGY 565
           +     GY
Sbjct: 143 VESGTAGY 150


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = +2

Query: 191 AKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSL 370
           +K+L++G  G+G E+ KN++LTG K++ L+D + +   +L  QFL     +G ++A+ + 
Sbjct: 24  SKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKAKVAR 83

Query: 371 ERXRGLNPMVDVTSHTKGVXXLPD---SFFTEFDVV 469
           E     NP   + +    +   P+    +F +FDVV
Sbjct: 84  ESALRFNPDAKIVAIHDNITS-PEYGIDYFKQFDVV 118


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
 Frame = +2

Query: 113 LSEAEAEQYDRQIRL--WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286
           L+ +E  +Y RQ+ L   G+  Q+ L+++ VL++G  GLG   A  +   G+  + L+D 
Sbjct: 52  LTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDY 111

Query: 287 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD-SFFTEFD 463
           + +   +L+ Q L   D++ V + E + +    LN      +H   +  +       ++D
Sbjct: 112 DVVDTSNLHRQVLHTEDRVEVPKVESAKQTLLRLNSDAQYNTHCLQLNSVNALDIINKYD 171

Query: 464 VVC-ATGLKQDQFXRINNACRDSNKKFICGRRL 559
           V+  AT     ++  +N+AC  + K  + G  L
Sbjct: 172 VIVDATDNVATRYL-LNDACVLAKKPLVSGSAL 203


>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +2

Query: 89  MVGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS 268
           M+G     L     +  +  + LW L+ +K    A+V+IIG   LG   A ++   G+K 
Sbjct: 256 MIGQTHRYLRSDWLKVTEACVVLWPLN-KKLKEDAEVVIIGGGCLGVSTAYHLAKRGLKD 314

Query: 269 VCLLDNEKL 295
           V LL+  +L
Sbjct: 315 VVLLEKSEL 323


>SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 417 LRAXMXYLTASSRNLTSYVQQVSNKINSNESTMLVATAT 533
           LRA   YL A  +N T  ++++S++  SN++  L   AT
Sbjct: 266 LRAQHEYLDAVEQNDTERLREISSRYQSNQTPHLATPAT 304


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 145 TNPPVGLRLAEXTTCSQSINHRLVR 219
           TNP +  R  E TTC Q +N  LV+
Sbjct: 769 TNPELQARFEEWTTCKQYVNQDLVK 793


>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 104 EVELSEAEAEQYDRQIRLWGLDSQKXLRAAK---VLIIGLSGLGAEIAKNVILTGVK--S 268
           + E S   +  +DR I++W L S++ +R  K     ++G+   G E  K++ L+  +  S
Sbjct: 96  DCEKSRIISASWDRSIKVWDLTSEQCIRTLKGHSDFVLGVDCSGTE--KDLFLSASRDGS 153

Query: 269 VCLLDNEK 292
           V L D  K
Sbjct: 154 VVLWDTRK 161


>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 191 AKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKL 295
           A V++IG   +G     ++   GVK+V LL+ +KL
Sbjct: 109 ADVVVIGGGSVGTSTLYHLTKMGVKNVILLERDKL 143


>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
          Length = 792

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 407 TSHTKGVXXLPDSFFTEFDVVCATGLK 487
           T  TKG+   PD     FDV+ A GLK
Sbjct: 637 TLSTKGLTARPDQVCLNFDVIRACGLK 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,735,738
Number of Sequences: 59808
Number of extensions: 349702
Number of successful extensions: 866
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)