BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0611 (600 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 83 2e-16 U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 81 8e-16 Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 76 2e-14 Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 76 2e-14 AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 56 2e-08 U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 53 2e-07 Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 52 3e-07 U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 41 6e-04 Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 38 0.004 AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 38 0.004 U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 29 2.5 Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical pr... 28 5.9 U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 5.9 Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 7.7 >Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical protein C08B6.9 protein. Length = 343 Score = 82.6 bits (195), Expect = 2e-16 Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Frame = +2 Query: 107 VELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286 +E+S+AE YDRQIRLWG+++Q +R +KVLIIG LGAE+AK + L GV + L+D+ Sbjct: 1 MEVSKAEQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDH 60 Query: 287 EKLKQIDLYSQFL--CPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDS----F 448 + ++ FL D + + S LN V + + V DS + Sbjct: 61 RLVDTEEIGMNFLYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEEDVLSKNDSEIEEY 120 Query: 449 FTEFDVVCATGLKQDQFXRINNACRDSNKKFICGRRLGY 565 T+F +V ++ ++NN CR + +FI G G+ Sbjct: 121 LTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYGW 159 >U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiquitin activating)homolog protein 1 protein. Length = 541 Score = 80.6 bits (190), Expect = 8e-16 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 3/146 (2%) Frame = +2 Query: 134 QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLY 313 +YDRQ+RLWG + Q + + ++G L EI K+++L GV+S ++D+ K++Q D+ Sbjct: 9 RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIG 68 Query: 314 SQFLCPPDKIGVNRAEGSLERXRGLNPMV--DVTSHTKGVXXLPD-SFFTEFDVVCATGL 484 F D IG +RAE +LE+ LNP V +S + D T F VV A Sbjct: 69 QNFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQ 128 Query: 485 KQDQFXRINNACRDSNKKFICGRRLG 562 ++ + FIC + G Sbjct: 129 NEEIDTTFAKVLYNIRVPFICIKTFG 154 >Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical protein C47E12.5b protein. Length = 1028 Score = 75.8 bits (178), Expect = 2e-14 Identities = 54/151 (35%), Positives = 72/151 (47%) Frame = +2 Query: 92 VGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 271 VG N EL + Y RQI G + LR A VLI GL +G EIAKN+IL GV+ V Sbjct: 10 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 67 Query: 272 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFF 451 + D + K DL +Q+ +G NRA ER LN V+V T L + F Sbjct: 68 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 124 Query: 452 TEFDVVCATGLKQDQFXRINNACRDSNKKFI 544 FD+V T + +I R N++ + Sbjct: 125 KTFDLVVLTDAARTAQRQIAAWTRAHNRRIL 155 Score = 35.9 bits (79), Expect = 0.022 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Frame = +2 Query: 110 ELSEAEAE----QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 268 +LSE + + +YD Q ++G Q+ L + ++G +G E+ KN+ + GV Sbjct: 402 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 461 Query: 269 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442 + + D ++++ +L QFL +G ++E + N V + + + V + Sbjct: 462 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 521 Query: 443 SFFTE 457 F + Sbjct: 522 HIFND 526 >Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical protein C47E12.5a protein. Length = 1113 Score = 75.8 bits (178), Expect = 2e-14 Identities = 54/151 (35%), Positives = 72/151 (47%) Frame = +2 Query: 92 VGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 271 VG N EL + Y RQI G + LR A VLI GL +G EIAKN+IL GV+ V Sbjct: 95 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 152 Query: 272 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFF 451 + D + K DL +Q+ +G NRA ER LN V+V T L + F Sbjct: 153 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 209 Query: 452 TEFDVVCATGLKQDQFXRINNACRDSNKKFI 544 FD+V T + +I R N++ + Sbjct: 210 KTFDLVVLTDAARTAQRQIAAWTRAHNRRIL 240 Score = 35.9 bits (79), Expect = 0.022 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Frame = +2 Query: 110 ELSEAEAE----QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 268 +LSE + + +YD Q ++G Q+ L + ++G +G E+ KN+ + GV Sbjct: 487 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 546 Query: 269 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442 + + D ++++ +L QFL +G ++E + N V + + + V + Sbjct: 547 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 606 Query: 443 SFFTE 457 F + Sbjct: 607 HIFND 611 >AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical protein F42G8.6 protein. Length = 402 Score = 56.0 bits (129), Expect = 2e-08 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Frame = +2 Query: 113 LSEAEAEQYDRQIRL--WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286 +S+ +A +Y RQ+ + +G+ QK L+ VLI+G GLG +A + G+ ++ ++D Sbjct: 10 ISKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDY 69 Query: 287 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXL-PDSFFTEFD 463 + + +L+ Q D++G ++A+ + + N ++V H + F ++ Sbjct: 70 DHISLDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLFKNYE 129 Query: 464 VVCATGLKQDQFXRINNACRDSNKKFICGRRL 559 +VC IN+ C N + G L Sbjct: 130 IVCDCTDNVATRYLINDVCVLLNIPLVSGSAL 161 >U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane ruffles in embryoprotein 1 protein. Length = 430 Score = 52.8 bits (121), Expect = 2e-07 Identities = 27/103 (26%), Positives = 55/103 (53%) Frame = +2 Query: 161 GLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDK 340 G ++ + L+ K+L+IG GLG E+ KN+ L+G +++ ++D + + +L QFL Sbjct: 33 GPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESD 92 Query: 341 IGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDVV 469 +G ++AE + + VT+H + F+ +F ++ Sbjct: 93 VGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSII 135 >Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical protein W02A11.4 protein. Length = 582 Score = 52.0 bits (119), Expect = 3e-07 Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%) Frame = +2 Query: 158 WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD 337 W +K +++ K+L+IG G+G E+ KN+ +TG + V ++D + + +L QFL + Sbjct: 4 WREKHEKIVQS-KILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKE 62 Query: 338 KIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDS--FFTEFDVVCATGLKQDQFXRIN 511 + ++A + + + P +++T + + FF +D+V + +N Sbjct: 63 HVSSSKAATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVN 122 Query: 512 NACRDSNKKFICGRRLGY 565 C +N+ I GY Sbjct: 123 RMCHAANRPLIDSGSGGY 140 >U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical protein T03F1.1 protein. Length = 419 Score = 41.1 bits (92), Expect = 6e-04 Identities = 22/101 (21%), Positives = 54/101 (53%) Frame = +2 Query: 152 RLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCP 331 R+ ++ + +R V ++G+ G+G+ +A+ + G+ + L D +K+ +I ++ Sbjct: 72 RMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKV-EIANMNRLFYQ 130 Query: 332 PDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFT 454 P++ G+++ E + + +NP V + H + + D+F T Sbjct: 131 PNQAGLSKVEAARDTLIHVNPDVQIEVHNFNITTM-DNFDT 170 >Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical protein M7.5 protein. Length = 647 Score = 38.3 bits (85), Expect = 0.004 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +2 Query: 194 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 367 KVLI+G LG IA+ +I GV+ + LDN + + Q L + ++G +AE + Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385 Query: 368 LERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDV 466 + + P + T+H V +P E DV Sbjct: 386 QAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417 >AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical protein M7.5 protein. Length = 647 Score = 38.3 bits (85), Expect = 0.004 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +2 Query: 194 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 367 KVLI+G LG IA+ +I GV+ + LDN + + Q L + ++G +AE + Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385 Query: 368 LERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDV 466 + + P + T+H V +P E DV Sbjct: 386 QAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417 >U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein F46H5.4 protein. Length = 2018 Score = 29.1 bits (62), Expect = 2.5 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -3 Query: 571 PXVPQTSPADKLFVAVATSIVDSXELILFETCCTYDVKFREE 446 P +P+ KLFV V + D LF + YD+K R++ Sbjct: 248 PRLPEQEETPKLFVKVEKAAADPFFEPLFASMAIYDIKNRQK 289 >Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical protein AC3.8 protein. Length = 531 Score = 27.9 bits (59), Expect = 5.9 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -1 Query: 102 LFPTIFCNAVIYNFNKFSTIFGYN 31 LF ++CN + YN+ + +FGY+ Sbjct: 9 LFFALYCNVLAYNYLVVAPVFGYS 32 >U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein C41A3.1 protein. Length = 7829 Score = 27.9 bits (59), Expect = 5.9 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +2 Query: 164 LDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEK 292 +DS + ++ GLSG+G EI K + G ++V L+ + Sbjct: 3195 VDSDSPITGNWLITGGLSGIGLEIGKFIANNGAENVILISRRQ 3237 >Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical protein C36A4.5 protein. Length = 954 Score = 27.5 bits (58), Expect = 7.7 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +2 Query: 89 MVGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS 268 + G NE E+ +A AE + LW + A +VLI G S L A I ++ + KS Sbjct: 234 LAGGNEAEVEKAAAENGTIAVLLW-RPAMTDQSAVRVLISGTSSL-ARIQQS-LDKAAKS 290 Query: 269 VCLLDNEKLKQID 307 + L+ +K D Sbjct: 291 LPFLNAPTVKSKD 303 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,203,760 Number of Sequences: 27780 Number of extensions: 260198 Number of successful extensions: 788 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 787 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1279376318 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -