Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0611
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 83 2e-16
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 81 8e-16
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 76 2e-14
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 76 2e-14
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 56 2e-08
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 53 2e-07
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 41 6e-04
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 38 0.004
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 38 0.004
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical pr... 28 5.9
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 82.6 bits (195), Expect = 2e-16
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Frame = +2
Query: 107 VELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286
+E+S+AE YDRQIRLWG+++Q +R +KVLIIG LGAE+AK + L GV + L+D+
Sbjct: 1 MEVSKAEQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDH 60
Query: 287 EKLKQIDLYSQFL--CPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDS----F 448
+ ++ FL D + + S LN V + + V DS +
Sbjct: 61 RLVDTEEIGMNFLYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEEDVLSKNDSEIEEY 120
Query: 449 FTEFDVVCATGLKQDQFXRINNACRDSNKKFICGRRLGY 565
T+F +V ++ ++NN CR + +FI G G+
Sbjct: 121 LTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYGW 159
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 80.6 bits (190), Expect = 8e-16
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Frame = +2
Query: 134 QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLY 313
+YDRQ+RLWG + Q + + ++G L EI K+++L GV+S ++D+ K++Q D+
Sbjct: 9 RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIG 68
Query: 314 SQFLCPPDKIGVNRAEGSLERXRGLNPMV--DVTSHTKGVXXLPD-SFFTEFDVVCATGL 484
F D IG +RAE +LE+ LNP V +S + D T F VV A
Sbjct: 69 QNFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQ 128
Query: 485 KQDQFXRINNACRDSNKKFICGRRLG 562
++ + FIC + G
Sbjct: 129 NEEIDTTFAKVLYNIRVPFICIKTFG 154
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 75.8 bits (178), Expect = 2e-14
Identities = 54/151 (35%), Positives = 72/151 (47%)
Frame = +2
Query: 92 VGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 271
VG N EL + Y RQI G + LR A VLI GL +G EIAKN+IL GV+ V
Sbjct: 10 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 67
Query: 272 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFF 451
+ D + K DL +Q+ +G NRA ER LN V+V T L + F
Sbjct: 68 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 124
Query: 452 TEFDVVCATGLKQDQFXRINNACRDSNKKFI 544
FD+V T + +I R N++ +
Sbjct: 125 KTFDLVVLTDAARTAQRQIAAWTRAHNRRIL 155
Score = 35.9 bits (79), Expect = 0.022
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +2
Query: 110 ELSEAEAE----QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 268
+LSE + + +YD Q ++G Q+ L + ++G +G E+ KN+ + GV
Sbjct: 402 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 461
Query: 269 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442
+ + D ++++ +L QFL +G ++E + N V + + + V +
Sbjct: 462 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 521
Query: 443 SFFTE 457
F +
Sbjct: 522 HIFND 526
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 75.8 bits (178), Expect = 2e-14
Identities = 54/151 (35%), Positives = 72/151 (47%)
Frame = +2
Query: 92 VGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 271
VG N EL + Y RQI G + LR A VLI GL +G EIAKN+IL GV+ V
Sbjct: 95 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 152
Query: 272 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFF 451
+ D + K DL +Q+ +G NRA ER LN V+V T L + F
Sbjct: 153 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 209
Query: 452 TEFDVVCATGLKQDQFXRINNACRDSNKKFI 544
FD+V T + +I R N++ +
Sbjct: 210 KTFDLVVLTDAARTAQRQIAAWTRAHNRRIL 240
Score = 35.9 bits (79), Expect = 0.022
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +2
Query: 110 ELSEAEAE----QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 268
+LSE + + +YD Q ++G Q+ L + ++G +G E+ KN+ + GV
Sbjct: 487 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 546
Query: 269 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442
+ + D ++++ +L QFL +G ++E + N V + + + V +
Sbjct: 547 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 606
Query: 443 SFFTE 457
F +
Sbjct: 607 HIFND 611
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Frame = +2
Query: 113 LSEAEAEQYDRQIRL--WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286
+S+ +A +Y RQ+ + +G+ QK L+ VLI+G GLG +A + G+ ++ ++D
Sbjct: 10 ISKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDY 69
Query: 287 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXL-PDSFFTEFD 463
+ + +L+ Q D++G ++A+ + + N ++V H + F ++
Sbjct: 70 DHISLDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLFKNYE 129
Query: 464 VVCATGLKQDQFXRINNACRDSNKKFICGRRL 559
+VC IN+ C N + G L
Sbjct: 130 IVCDCTDNVATRYLINDVCVLLNIPLVSGSAL 161
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/103 (26%), Positives = 55/103 (53%)
Frame = +2
Query: 161 GLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDK 340
G ++ + L+ K+L+IG GLG E+ KN+ L+G +++ ++D + + +L QFL
Sbjct: 33 GPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESD 92
Query: 341 IGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDVV 469
+G ++AE + + VT+H + F+ +F ++
Sbjct: 93 VGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSII 135
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +2
Query: 158 WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD 337
W +K +++ K+L+IG G+G E+ KN+ +TG + V ++D + + +L QFL +
Sbjct: 4 WREKHEKIVQS-KILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKE 62
Query: 338 KIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDS--FFTEFDVVCATGLKQDQFXRIN 511
+ ++A + + + P +++T + + FF +D+V + +N
Sbjct: 63 HVSSSKAATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVN 122
Query: 512 NACRDSNKKFICGRRLGY 565
C +N+ I GY
Sbjct: 123 RMCHAANRPLIDSGSGGY 140
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/101 (21%), Positives = 54/101 (53%)
Frame = +2
Query: 152 RLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCP 331
R+ ++ + +R V ++G+ G+G+ +A+ + G+ + L D +K+ +I ++
Sbjct: 72 RMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKV-EIANMNRLFYQ 130
Query: 332 PDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFT 454
P++ G+++ E + + +NP V + H + + D+F T
Sbjct: 131 PNQAGLSKVEAARDTLIHVNPDVQIEVHNFNITTM-DNFDT 170
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 194 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 367
KVLI+G LG IA+ +I GV+ + LDN + + Q L + ++G +AE +
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385
Query: 368 LERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDV 466
+ + P + T+H V +P E DV
Sbjct: 386 QAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 194 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 367
KVLI+G LG IA+ +I GV+ + LDN + + Q L + ++G +AE +
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385
Query: 368 LERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDV 466
+ + P + T+H V +P E DV
Sbjct: 386 QAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 571 PXVPQTSPADKLFVAVATSIVDSXELILFETCCTYDVKFREE 446
P +P+ KLFV V + D LF + YD+K R++
Sbjct: 248 PRLPEQEETPKLFVKVEKAAADPFFEPLFASMAIYDIKNRQK 289
>Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical
protein AC3.8 protein.
Length = 531
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 102 LFPTIFCNAVIYNFNKFSTIFGYN 31
LF ++CN + YN+ + +FGY+
Sbjct: 9 LFFALYCNVLAYNYLVVAPVFGYS 32
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 164 LDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEK 292
+DS + ++ GLSG+G EI K + G ++V L+ +
Sbjct: 3195 VDSDSPITGNWLITGGLSGIGLEIGKFIANNGAENVILISRRQ 3237
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +2
Query: 89 MVGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS 268
+ G NE E+ +A AE + LW + A +VLI G S L A I ++ + KS
Sbjct: 234 LAGGNEAEVEKAAAENGTIAVLLW-RPAMTDQSAVRVLISGTSSL-ARIQQS-LDKAAKS 290
Query: 269 VCLLDNEKLKQID 307
+ L+ +K D
Sbjct: 291 LPFLNAPTVKSKD 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,760
Number of Sequences: 27780
Number of extensions: 260198
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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