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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0611
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical pr...    83   2e-16
U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    81   8e-16
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    76   2e-14
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    76   2e-14
AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...    56   2e-08
U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membran...    53   2e-07
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    52   3e-07
U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical p...    41   6e-04
Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical p...    38   0.004
AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical ...    38   0.004
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical
           protein C08B6.9 protein.
          Length = 343

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
 Frame = +2

Query: 107 VELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286
           +E+S+AE   YDRQIRLWG+++Q  +R +KVLIIG   LGAE+AK + L GV  + L+D+
Sbjct: 1   MEVSKAEQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDH 60

Query: 287 EKLKQIDLYSQFL--CPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDS----F 448
             +   ++   FL     D   + +   S      LN  V +    + V    DS    +
Sbjct: 61  RLVDTEEIGMNFLYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEEDVLSKNDSEIEEY 120

Query: 449 FTEFDVVCATGLKQDQFXRINNACRDSNKKFICGRRLGY 565
            T+F +V       ++  ++NN CR  + +FI G   G+
Sbjct: 121 LTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYGW 159


>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
 Frame = +2

Query: 134 QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLY 313
           +YDRQ+RLWG + Q  + +    ++G   L  EI K+++L GV+S  ++D+ K++Q D+ 
Sbjct: 9   RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIG 68

Query: 314 SQFLCPPDKIGVNRAEGSLERXRGLNPMV--DVTSHTKGVXXLPD-SFFTEFDVVCATGL 484
             F    D IG +RAE +LE+   LNP V    +S       + D    T F VV A   
Sbjct: 69  QNFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQ 128

Query: 485 KQDQFXRINNACRDSNKKFICGRRLG 562
            ++          +    FIC +  G
Sbjct: 129 NEEIDTTFAKVLYNIRVPFICIKTFG 154


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 54/151 (35%), Positives = 72/151 (47%)
 Frame = +2

Query: 92  VGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 271
           VG N  EL +     Y RQI   G  +   LR A VLI GL  +G EIAKN+IL GV+ V
Sbjct: 10  VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 67

Query: 272 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFF 451
            + D +  K  DL +Q+      +G NRA    ER   LN  V+V   T     L + F 
Sbjct: 68  TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 124

Query: 452 TEFDVVCATGLKQDQFXRINNACRDSNKKFI 544
             FD+V  T   +    +I    R  N++ +
Sbjct: 125 KTFDLVVLTDAARTAQRQIAAWTRAHNRRIL 155



 Score = 35.9 bits (79), Expect = 0.022
 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
 Frame = +2

Query: 110 ELSEAEAE----QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 268
           +LSE + +    +YD Q  ++G   Q+ L   +  ++G   +G E+ KN+ + GV     
Sbjct: 402 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 461

Query: 269 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442
             + + D ++++  +L  QFL     +G  ++E +       N  V + +  + V    +
Sbjct: 462 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 521

Query: 443 SFFTE 457
             F +
Sbjct: 522 HIFND 526


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 54/151 (35%), Positives = 72/151 (47%)
 Frame = +2

Query: 92  VGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 271
           VG N  EL +     Y RQI   G  +   LR A VLI GL  +G EIAKN+IL GV+ V
Sbjct: 95  VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 152

Query: 272 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFF 451
            + D +  K  DL +Q+      +G NRA    ER   LN  V+V   T     L + F 
Sbjct: 153 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 209

Query: 452 TEFDVVCATGLKQDQFXRINNACRDSNKKFI 544
             FD+V  T   +    +I    R  N++ +
Sbjct: 210 KTFDLVVLTDAARTAQRQIAAWTRAHNRRIL 240



 Score = 35.9 bits (79), Expect = 0.022
 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
 Frame = +2

Query: 110 ELSEAEAE----QYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 268
           +LSE + +    +YD Q  ++G   Q+ L   +  ++G   +G E+ KN+ + GV     
Sbjct: 487 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 546

Query: 269 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPD 442
             + + D ++++  +L  QFL     +G  ++E +       N  V + +  + V    +
Sbjct: 547 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 606

Query: 443 SFFTE 457
             F +
Sbjct: 607 HIFND 611


>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
 Frame = +2

Query: 113 LSEAEAEQYDRQIRL--WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 286
           +S+ +A +Y RQ+ +  +G+  QK L+   VLI+G  GLG  +A  +   G+ ++ ++D 
Sbjct: 10  ISKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDY 69

Query: 287 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXL-PDSFFTEFD 463
           + +   +L+ Q     D++G ++A+   +  +  N  ++V  H   +        F  ++
Sbjct: 70  DHISLDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLFKNYE 129

Query: 464 VVCATGLKQDQFXRINNACRDSNKKFICGRRL 559
           +VC           IN+ C   N   + G  L
Sbjct: 130 IVCDCTDNVATRYLINDVCVLLNIPLVSGSAL 161


>U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membrane
           ruffles in embryoprotein 1 protein.
          Length = 430

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 27/103 (26%), Positives = 55/103 (53%)
 Frame = +2

Query: 161 GLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDK 340
           G ++ + L+  K+L+IG  GLG E+ KN+ L+G +++ ++D + +   +L  QFL     
Sbjct: 33  GPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESD 92

Query: 341 IGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDVV 469
           +G ++AE +    +       VT+H   +      F+ +F ++
Sbjct: 93  VGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSII 135


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
 Frame = +2

Query: 158 WGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD 337
           W    +K +++ K+L+IG  G+G E+ KN+ +TG + V ++D + +   +L  QFL   +
Sbjct: 4   WREKHEKIVQS-KILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKE 62

Query: 338 KIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDS--FFTEFDVVCATGLKQDQFXRIN 511
            +  ++A  + +  +   P +++T     +     +  FF  +D+V      +     +N
Sbjct: 63  HVSSSKAATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVN 122

Query: 512 NACRDSNKKFICGRRLGY 565
             C  +N+  I     GY
Sbjct: 123 RMCHAANRPLIDSGSGGY 140


>U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical
           protein T03F1.1 protein.
          Length = 419

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 22/101 (21%), Positives = 54/101 (53%)
 Frame = +2

Query: 152 RLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCP 331
           R+  ++  + +R   V ++G+ G+G+ +A+ +   G+  + L D +K+ +I   ++    
Sbjct: 72  RMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKV-EIANMNRLFYQ 130

Query: 332 PDKIGVNRAEGSLERXRGLNPMVDVTSHTKGVXXLPDSFFT 454
           P++ G+++ E + +    +NP V +  H   +  + D+F T
Sbjct: 131 PNQAGLSKVEAARDTLIHVNPDVQIEVHNFNITTM-DNFDT 170


>Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +2

Query: 194 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 367
           KVLI+G   LG  IA+ +I  GV+ +  LDN  +   +   Q L   +  ++G  +AE +
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385

Query: 368 LERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDV 466
               + + P +  T+H   V  +P     E DV
Sbjct: 386 QAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417


>AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +2

Query: 194 KVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGVNRAEGS 367
           KVLI+G   LG  IA+ +I  GV+ +  LDN  +   +   Q L   +  ++G  +AE +
Sbjct: 326 KVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGRGKAETA 385

Query: 368 LERXRGLNPMVDVTSHTKGVXXLPDSFFTEFDV 466
               + + P +  T+H   V  +P     E DV
Sbjct: 386 QAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 571 PXVPQTSPADKLFVAVATSIVDSXELILFETCCTYDVKFREE 446
           P +P+     KLFV V  +  D     LF +   YD+K R++
Sbjct: 248 PRLPEQEETPKLFVKVEKAAADPFFEPLFASMAIYDIKNRQK 289


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 102 LFPTIFCNAVIYNFNKFSTIFGYN 31
           LF  ++CN + YN+   + +FGY+
Sbjct: 9   LFFALYCNVLAYNYLVVAPVFGYS 32


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 164  LDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEK 292
            +DS   +    ++  GLSG+G EI K +   G ++V L+   +
Sbjct: 3195 VDSDSPITGNWLITGGLSGIGLEIGKFIANNGAENVILISRRQ 3237


>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = +2

Query: 89  MVGNNEVELSEAEAEQYDRQIRLWGLDSQKXLRAAKVLIIGLSGLGAEIAKNVILTGVKS 268
           + G NE E+ +A AE     + LW   +     A +VLI G S L A I ++ +    KS
Sbjct: 234 LAGGNEAEVEKAAAENGTIAVLLW-RPAMTDQSAVRVLISGTSSL-ARIQQS-LDKAAKS 290

Query: 269 VCLLDNEKLKQID 307
           +  L+   +K  D
Sbjct: 291 LPFLNAPTVKSKD 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,760
Number of Sequences: 27780
Number of extensions: 260198
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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