BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0610 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 28 1.6 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.6 SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7 >SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 790 Score = 27.9 bits (59), Expect = 1.6 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = +2 Query: 284 KPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLXEVYSSLV 463 K D+ FE+ P + Y N+ ++ F KI + +L YP E+++ + Sbjct: 501 KLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGV---ALFSYPVAFELWNLYL 557 Query: 464 EK-VKEYDG 487 K VK Y G Sbjct: 558 TKFVKRYQG 566 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -3 Query: 82 YSFRKFW*QALXNLID*VCVFIHIY 8 + FR+FW L +L+ V +F HIY Sbjct: 41 FHFRRFWTIWLKSLVIMVLLFTHIY 65 >SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 600 Score = 25.4 bits (53), Expect = 8.7 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +2 Query: 341 YINIFDKKDIFNV-CIKILHEKITVDSLKKYPSLXEVYSSLVEKVKE 478 ++ I + + IFN+ CI+ LHE + +D L L ++ ++ + KE Sbjct: 291 FLRINNGESIFNLLCIEDLHESVNLDIL----CLKDILRNIAQSSKE 333 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,665,393 Number of Sequences: 5004 Number of extensions: 48920 Number of successful extensions: 134 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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