Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0610
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   6.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 284 KPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLXEVYSSLV 463
           K  D+ FE+    P   + Y N+ ++   F    KI    +   +L  YP   E+++  +
Sbjct: 501 KLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGV---ALFSYPVAFELWNLYL 557

Query: 464 EK-VKEYDG 487
            K VK Y G
Sbjct: 558 TKFVKRYQG 566


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 82  YSFRKFW*QALXNLID*VCVFIHIY 8
           + FR+FW   L +L+  V +F HIY
Sbjct: 41  FHFRRFWTIWLKSLVIMVLLFTHIY 65


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 341 YINIFDKKDIFNV-CIKILHEKITVDSLKKYPSLXEVYSSLVEKVKE 478
           ++ I + + IFN+ CI+ LHE + +D L     L ++  ++ +  KE
Sbjct: 291 FLRINNGESIFNLLCIEDLHESVNLDIL----CLKDILRNIAQSSKE 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,393
Number of Sequences: 5004
Number of extensions: 48920
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)