BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0610 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 28 9.1 >01_07_0353 + 42962769-42962972,42963062-42963138,42963571-42963817, 42963907-42964476,42964998-42965171,42965514-42965640, 42965719-42965828,42966707-42966907,42966999-42967966, 42968110-42968358,42968760-42969105 Length = 1090 Score = 27.9 bits (59), Expect = 9.1 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +3 Query: 528 LMDDYLXSNKLXGLRXLFSNIGXGLTTEHFMQGNYYEVIYXSLKKXTAXKNIEITKLVFE 707 L+D ++KL L+ L + I G+ HF + + K A +++E+ KLV+ Sbjct: 36 LLDSRFDADKLDALKRLLALIAQGVDVAHF---------FPQVVKNVASQSLEVKKLVYL 86 Query: 708 CLL 716 LL Sbjct: 87 YLL 89 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,443,496 Number of Sequences: 37544 Number of extensions: 230044 Number of successful extensions: 412 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 412 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -