BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0610 (750 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.0 SB_4149| Best HMM Match : VWA (HMM E-Value=0) 28 9.3 >SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1031 Score = 28.7 bits (61), Expect = 5.3 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +2 Query: 296 KSFEILY--GFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLXEVYSSLV 463 + FE+++ G L L +++ K+ C K+LHE + + PS VYS LV Sbjct: 768 EGFEVIFENGEKLVYKLKKSLYGLKESGRNCNKLLHESLMESGFNRNPSDHCVYSKLV 825 >SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 940 Score = 28.7 bits (61), Expect = 5.3 Identities = 14/55 (25%), Positives = 30/55 (54%) Frame = +2 Query: 314 YGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLXEVYSSLVEKVKE 478 Y F + ++ ++I D+K +F C+ +L + ++ Y L ++ S+ E +KE Sbjct: 135 YDFLVSWLVILHIEDRKTLFKKCLDLLKPGGKI-YIEDYYKLADISPSIAEDLKE 188 >SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 336 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = -2 Query: 707 FKDEFCNFNILXGCXLFKAXIYYFIIISLHKMFCCQTPSNVAE 579 F FC + G L A IY +IS+++ FC P+ E Sbjct: 94 FGKSFCYVHGFTGMTLALASIYTMSLISVNRYFCIVKPAKYQE 136 >SB_4149| Best HMM Match : VWA (HMM E-Value=0) Length = 1141 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +2 Query: 266 ECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKIL 394 E + ++P K ++L+G P+ L I+ K FN + +L Sbjct: 455 EGADKVRPCGKPIDVLFGIPVSNHLGQEIWSAKSTFNSILGLL 497 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,945,472 Number of Sequences: 59808 Number of extensions: 305973 Number of successful extensions: 590 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 590 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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