Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0610
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.0  
SB_4149| Best HMM Match : VWA (HMM E-Value=0)                          28   9.3  

>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 296 KSFEILY--GFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLXEVYSSLV 463
           + FE+++  G  L   L  +++  K+    C K+LHE +      + PS   VYS LV
Sbjct: 768 EGFEVIFENGEKLVYKLKKSLYGLKESGRNCNKLLHESLMESGFNRNPSDHCVYSKLV 825


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 314 YGFPLDQILYINIFDKKDIFNVCIKILHEKITVDSLKKYPSLXEVYSSLVEKVKE 478
           Y F +  ++ ++I D+K +F  C+ +L     +  ++ Y  L ++  S+ E +KE
Sbjct: 135 YDFLVSWLVILHIEDRKTLFKKCLDLLKPGGKI-YIEDYYKLADISPSIAEDLKE 188


>SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 707 FKDEFCNFNILXGCXLFKAXIYYFIIISLHKMFCCQTPSNVAE 579
           F   FC  +   G  L  A IY   +IS+++ FC   P+   E
Sbjct: 94  FGKSFCYVHGFTGMTLALASIYTMSLISVNRYFCIVKPAKYQE 136


>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1141

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 266 ECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNVCIKIL 394
           E  + ++P  K  ++L+G P+   L   I+  K  FN  + +L
Sbjct: 455 EGADKVRPCGKPIDVLFGIPVSNHLGQEIWSAKSTFNSILGLL 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,945,472
Number of Sequences: 59808
Number of extensions: 305973
Number of successful extensions: 590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)