Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0610
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066935-1|AAH66935.1|  508|Homo sapiens C8orf41 protein protein.      42   0.002
BC007387-1|AAH07387.1|  508|Homo sapiens chromosome 8 open readi...    42   0.002
AK026916-1|BAB15590.1|  508|Homo sapiens protein ( Homo sapiens ...    42   0.002

>BC066935-1|AAH66935.1|  508|Homo sapiens C8orf41 protein protein.
          Length = 508

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 507 VLPLSLILMDDYLXSNKLXGLRXLFSNIGXGLTTEHFMQGNYYEVIYXSLKKXTAXKNIE 686
           VLP SL++ DDY   NK+ G+  L  +I   +     +Q N  +V+Y ++          
Sbjct: 248 VLPASLVISDDYQTENKILGVHCL-HHIVLNVPAADLLQYNRAQVLYHAISNHLYTPEHH 306

Query: 687 ITKLVFECLLQLLQVL 734
           + + V  CLL L  +L
Sbjct: 307 LIQAVLLCLLDLFPIL 322


>BC007387-1|AAH07387.1|  508|Homo sapiens chromosome 8 open reading
           frame 41 protein.
          Length = 508

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 507 VLPLSLILMDDYLXSNKLXGLRXLFSNIGXGLTTEHFMQGNYYEVIYXSLKKXTAXKNIE 686
           VLP SL++ DDY   NK+ G+  L  +I   +     +Q N  +V+Y ++          
Sbjct: 248 VLPASLVISDDYQTENKILGVHCL-HHIVLNVPAADLLQYNRAQVLYHAISNHLYTPEHH 306

Query: 687 ITKLVFECLLQLLQVL 734
           + + V  CLL L  +L
Sbjct: 307 LIQAVLLCLLDLFPIL 322


>AK026916-1|BAB15590.1|  508|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23263 fis, clone COL06129. ).
          Length = 508

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 507 VLPLSLILMDDYLXSNKLXGLRXLFSNIGXGLTTEHFMQGNYYEVIYXSLKKXTAXKNIE 686
           VLP SL++ DDY   NK+ G+  L  +I   +     +Q N  +V+Y ++          
Sbjct: 248 VLPASLVISDDYQTENKILGVHCL-HHIVLNVPAADLLQYNRAQVLYHAISNHLYTPEHH 306

Query: 687 ITKLVFECLLQLLQVL 734
           + + V  CLL L  +L
Sbjct: 307 LIQAVLLCLLDLFPIL 322


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,106,803
Number of Sequences: 237096
Number of extensions: 1386411
Number of successful extensions: 5836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5833
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)