BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0610 (750 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical ... 31 0.66 U37548-2|ABK57090.1| 452|Caenorhabditis elegans Sulfatase domai... 30 2.0 U37548-1|AAA79198.2| 488|Caenorhabditis elegans Sulfatase domai... 30 2.0 U39851-1|AAF99869.2| 281|Caenorhabditis elegans Hypothetical pr... 28 6.2 >AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical protein Y26D4A.2 protein. Length = 537 Score = 31.5 bits (68), Expect = 0.66 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 552 NKLXGLRXLFSNIGXGLTTEHFMQGNYYEVIYXSLKK 662 NK+ ++ + SN GLTT+ + G +Y + Y LK+ Sbjct: 245 NKVMAIKIITSNSTCGLTTDELINGKHYYLPYHRLKQ 281 >U37548-2|ABK57090.1| 452|Caenorhabditis elegans Sulfatase domain protein protein3, isoform b protein. Length = 452 Score = 29.9 bits (64), Expect = 2.0 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +2 Query: 248 GNWNTEECKEYIKPLDKSFEILYGFPLDQILYIN 349 G W+ CK+ P ++ F+ YGF Q Y N Sbjct: 96 GKWHLGYCKKEFLPTNRGFDYFYGFYGPQTGYFN 129 >U37548-1|AAA79198.2| 488|Caenorhabditis elegans Sulfatase domain protein protein3, isoform a protein. Length = 488 Score = 29.9 bits (64), Expect = 2.0 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +2 Query: 248 GNWNTEECKEYIKPLDKSFEILYGFPLDQILYIN 349 G W+ CK+ P ++ F+ YGF Q Y N Sbjct: 132 GKWHLGYCKKEFLPTNRGFDYFYGFYGPQTGYFN 165 >U39851-1|AAF99869.2| 281|Caenorhabditis elegans Hypothetical protein C23G10.5 protein. Length = 281 Score = 28.3 bits (60), Expect = 6.2 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = +2 Query: 251 NWNTEECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNV-C--IKILHEKITVDSL 421 N N + + + P SFE F LD + + F + ++FN C I++ +I+ +++ Sbjct: 124 NLNVTKSMDLMIPTHSSFEFSQDFHLDAVRLRSCFGRNNLFNFHCKEIEVSDSEISSENV 183 Query: 422 KKY 430 +Y Sbjct: 184 NQY 186 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,158,805 Number of Sequences: 27780 Number of extensions: 256399 Number of successful extensions: 621 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 621 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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