Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0610
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    31   0.66 
U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domai...    30   2.0  
U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domai...    30   2.0  
U39851-1|AAF99869.2|  281|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 552 NKLXGLRXLFSNIGXGLTTEHFMQGNYYEVIYXSLKK 662
           NK+  ++ + SN   GLTT+  + G +Y + Y  LK+
Sbjct: 245 NKVMAIKIITSNSTCGLTTDELINGKHYYLPYHRLKQ 281


>U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform b protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 GNWNTEECKEYIKPLDKSFEILYGFPLDQILYIN 349
           G W+   CK+   P ++ F+  YGF   Q  Y N
Sbjct: 96  GKWHLGYCKKEFLPTNRGFDYFYGFYGPQTGYFN 129


>U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform a protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 GNWNTEECKEYIKPLDKSFEILYGFPLDQILYIN 349
           G W+   CK+   P ++ F+  YGF   Q  Y N
Sbjct: 132 GKWHLGYCKKEFLPTNRGFDYFYGFYGPQTGYFN 165


>U39851-1|AAF99869.2|  281|Caenorhabditis elegans Hypothetical
           protein C23G10.5 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 251 NWNTEECKEYIKPLDKSFEILYGFPLDQILYINIFDKKDIFNV-C--IKILHEKITVDSL 421
           N N  +  + + P   SFE    F LD +   + F + ++FN  C  I++   +I+ +++
Sbjct: 124 NLNVTKSMDLMIPTHSSFEFSQDFHLDAVRLRSCFGRNNLFNFHCKEIEVSDSEISSENV 183

Query: 422 KKY 430
            +Y
Sbjct: 184 NQY 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,805
Number of Sequences: 27780
Number of extensions: 256399
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)