Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0608
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    36   0.007
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   2.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.4  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   3.4  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 206 MTRGNQRDLARAKNQKKQVEMQKKKNASEKT 298
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 25  YTLIIAKSFFSNFTPIGEMEGGALSXVSTGLAYRPAFT 138
           Y L+ +  FFS F  IG+M   +L+ + T  A+ P  +
Sbjct: 222 YGLVASIIFFSGFQHIGKMREVSLAKLPTTKAFEPTLS 259


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   RCVAFVLYTLIIAKSFFSNF 63
           RC+  + YT  IAK  FSNF
Sbjct: 621 RCILLIPYTRKIAKLLFSNF 640


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 236 RAKNQKKQVEMQKKKNASEKTGLSLQ 313
           +AKN+KK+ + QKKK  + K  L  Q
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQ 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,392
Number of Sequences: 5004
Number of extensions: 42001
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)