Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0608
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical ...    51   7e-07
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical
           protein Y37E3.4 protein.
          Length = 82

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
 Frame = +2

Query: 206 MTRGNQRDLARAKNQKKQVEMQKKKNASEK---TGLSLQERKHRDA 334
           MTRGNQRDLAR KNQKK  + +K++ AS +    GLS+  R +RDA
Sbjct: 1   MTRGNQRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDA 46


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 221 QRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 334
           +RD  R K  +K+ E +KKK+A EK     +E+K +DA
Sbjct: 393 ERDERRTK--RKEEEEKKKKDAEEKKKKDAEEKKKKDA 428



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 200 IRMTRGNQRDLARAKNQKKQ--VEMQKKKNASEKTGLSLQERKHRDA 334
           ++M R  +R   + + +KK+   E +KKK+A EK     ++ K +DA
Sbjct: 390 LKMERDERRTKRKEEEEKKKKDAEEKKKKDAEEKKKKDAEDEKKKDA 436


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 209 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 328
           +R    +  +   +KK++E  KK+ A +K  LSL + K++
Sbjct: 246 SRETVAETEKMNGEKKKIEKDKKRKAGDKADLSLDDGKNK 285


>Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical
           protein F19C6.2b protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 215 GNQRDLARAKNQKKQVEMQKKKNASEK 295
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 215 GNQRDLARAKNQKKQVEMQKKKNASEK 295
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373


>U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical
           protein C18B2.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 200 IRMTRGNQRDLARAKNQKKQVE-MQKKKNASEKTGLSL 310
           + M+  ++  L R  N  + ++ +QKK NASE TG SL
Sbjct: 148 MNMSEWDKESLCRGDNTFRHLKSLQKKYNASEMTGWSL 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,042,631
Number of Sequences: 27780
Number of extensions: 229370
Number of successful extensions: 578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)