Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0606
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    25   0.28 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   2.6  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.0  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.0  

>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 365 YIVIKLF*SYVSRLELIVLQEV*FVLKNGKI 457
           ++V     +YVS +E ++L+E+  +LKN ++
Sbjct: 7   FLVFGALLTYVSSVEYLILREIDTILKNDQM 37


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 397 HVTSKQLYNYIFFCFYAIF--SVIN*IIKKHDEIIMYESVINCSE 269
           H+  ++ YN ++FC   ++  S IN I+            I CSE
Sbjct: 323 HLEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSE 367


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -1

Query: 382 QLYNYIFFCFYAIFSVIN*IIK 317
           ++++Y    FY +FS ++   K
Sbjct: 25  RIHSYFMVAFYVVFSSVSTFFK 46


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -1

Query: 382 QLYNYIFFCFYAIFSVIN*IIK 317
           ++++Y    FY +FS ++   K
Sbjct: 25  RIHSYFMVAFYVVFSSVSTFFK 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,404
Number of Sequences: 336
Number of extensions: 1709
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)