Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0606
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)                 29   1.6  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   1.6  

>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
          Length = 811

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 213 NCFFCLSSNIITELSQEPLLVRHNYIN*KCFLPF-INYLPNSYFTVV 76
           NC  CLSS II   S E LL+  N I     LP  I  LPN  F  V
Sbjct: 156 NCLICLSSRIIELQSLEKLLLMENNIT---VLPAEIAKLPNLQFVNV 199


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 227 SYNLKNIVSGLNGAF*TIYDRFVHNDFIMFFYYLINDGKNCIKTKKYIVIKL 382
           +Y L++ ++  NG F  I  +  + DF++   Y  ND  + +   K I IKL
Sbjct: 151 NYQLQDTIADSNGRFLIIRCKIQNEDFLLINSYAPNDDASQVLLFKEIQIKL 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,523,338
Number of Sequences: 59808
Number of extensions: 168787
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)