Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0606
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containi...    27   5.2  
At4g23990.1 68417.m03448 cellulose synthase family protein simil...    27   6.9  
At5g12270.1 68418.m01443 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.1  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    27   9.1  

>At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 871

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 146 CLTKRGS*DSSVIIFEDKQKKQLNVISSYNL 238
           CL K G  D ++ +FE+ +K     +S+YN+
Sbjct: 352 CLRKMGKVDEALKVFEEMKKDAAPNLSTYNI 382


>At4g23990.1 68417.m03448 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 732

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +2

Query: 182 IIFEDKQKKQLNVISSYNLKNIV---SGLNGAF*TIYDRFVHNDFIMFFYYLINDGKNCI 352
           +++ED + +  +V+ S  ++          G F    D+F  +D       L N   +  
Sbjct: 196 MMYEDMKSRVEHVVESGKVETAFITCDQFRGVFDLWTDKFTRHDHPTIIQVLQNSENDMD 255

Query: 353 KTKKYIVIKLF*SYVSR 403
            TKKYI+  L   YVSR
Sbjct: 256 DTKKYIMPNLI--YVSR 270


>At5g12270.1 68418.m01443 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similarity to ripening protein E8,
           tomato, PIR:S01642; contains Pfam domain PF03171,
           2OG-Fe(II) oxygenase superfamily
          Length = 360

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 281 YDRFVHNDFIMFFYYLINDGKNCIKTKK 364
           Y + V++D++ FF+   +DGK  I++ K
Sbjct: 331 YRKIVYSDYLKFFFGRPHDGKKTIESIK 358


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 492 FFFFFLYTNLHIILPFL 442
           F F+FLY NL I L FL
Sbjct: 424 FVFYFLYLNLQIALAFL 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,473,058
Number of Sequences: 28952
Number of extensions: 121149
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)