Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0604
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated pr...    31   4.0  
BC100937-1|AAI00938.1|  301|Homo sapiens solute carrier family 2...    30   6.9  

>L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated
           protein 1B protein.
          Length = 2468

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = +1

Query: 55  QKENLKKHRADCLSXTKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKK 234
           +KE  K+ + +     K  ++ + KL   D K  + PL +      +K ++  K+   KK
Sbjct: 710 KKEVKKEEKKEVKKEEKEPKKEIKKLPK-DAKKSSTPLSEAKKPAALKPKVPKKEESVKK 768

Query: 235 DVALAKVPNAEDKLKVEK 288
           D   A  P  + K+KV K
Sbjct: 769 DSVAAGKPKEKGKIKVIK 786


>BC100937-1|AAI00938.1|  301|Homo sapiens solute carrier family 25
           (mitochondrial carrier; ornithine transporter) member
           protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 241 ALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKD 372
           ALA  P    K +++ + +  ++ K    H T W+ VKC  +KD
Sbjct: 121 ALALCPTELVKCRLQTMYEMEMSGKIAKSHNTIWSVVKCILKKD 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,802,721
Number of Sequences: 237096
Number of extensions: 1767007
Number of successful extensions: 3284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3284
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)