Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0604
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.56 
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    31   0.97 
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    30   1.3  
At5g17240.1 68418.m02020 SET domain-containing protein contains ...    29   3.0  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   3.9  
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    28   5.2  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   9.0  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   9.0  

>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 385 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 290
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 58  KENLKKHRADCLSXTKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 225
           K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 80  KSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = +1

Query: 130 LKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLA 309
           LK  + +  N   +K   C+++ S+       F+K + L  +P  +D+  +  L++ CL 
Sbjct: 497 LKLAEAQRMNTDSRKAIFCVIMSSEDYID--AFEKLLRL-DLPGKQDREIMRVLVECCLQ 553

Query: 310 NKGNSPHQTAWNYVKCYHEKDPKHAL 387
            K  +   T      C H+K+ K  L
Sbjct: 554 EKAFNKFYTVLASKLCEHDKNHKFTL 579


>At5g17240.1 68418.m02020 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 491

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166 LKKYALCMLI-KSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 342
           LKK  L + + +  LMT +    KD+ L+   N  + L   +++  CL  + +   ++ W
Sbjct: 57  LKKGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFW 116

Query: 343 NYVKCYH 363
            Y   +H
Sbjct: 117 -YPYLFH 122


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 406 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 314
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 229 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 342
           KK   L + P A+D  ++EK+++AC  N       T W
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 297 RLPGQQRQQPSPNSLELCEMLPRERPE 377
           R P ++R++ +PN+LE    LP++  E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 366
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,969
Number of Sequences: 28952
Number of extensions: 265603
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)