Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0602
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.052
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.48
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.85
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 26 4.5
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 4.5
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 4.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 7.9
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 7.9
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 7.9
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.7 bits (71), Expect = 0.052
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 502 TDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPT 663
T S P + S + S + P +A++T+S + AST A + SRS PT
Sbjct: 299 TTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT 352
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 520 PPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPTALVTAXTP 687
P +RS +L S V LIP + + + S + PAS P S S + + V + P
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP 494
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.85
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Frame = +1
Query: 502 TDSAARPPVRSPTLARSVVT---LIPKIAVNTTSV-------SXALPASTVAPSEPFSRS 651
TD PP S T + S +T +IP + TT+ S LP+S ++ + S S
Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSS 243
Query: 652 ETPTALVTA-XTPKT 693
PT+++T+ TP T
Sbjct: 244 VLPTSIITSTSTPVT 258
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +3
Query: 150 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 275
+ CD+ W C+N G+ L C NG+ +D K L D L N
Sbjct: 30 LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 499 QTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFS 645
Q SA P R + + T P +TS AST++PS PFS
Sbjct: 348 QNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +1
Query: 400 PPAIXAAPDLPTTXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVT---LIP 570
P + + P +T +P S F + T+ T SA+ P S + S T
Sbjct: 632 PTSSASTPLSNSTVAPTSTFTSSGFNT--TSGLPTSSASTPSSNSSIVPTSTFTSSGFNT 689
Query: 571 KIAVNTTSVSXALPASTVAPSEPFSRS 651
+ T+S S L STVAP+ F+ S
Sbjct: 690 TSGLPTSSASTPLSNSTVAPTSTFTSS 716
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 614 AGNAXETDVVFTAIFGMSVTTERASVGDLTGGRAAESVCXL 492
A NA T V A G+ + TE+ +L G + E VC +
Sbjct: 27 AVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 174 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 284
C N V LK NG + S+ L+E C Y N C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 679 SQLPVPSXSPILKTVPMGQP 620
++LPVPS +PIL T P+ P
Sbjct: 55 NKLPVPSTNPILTTEPIVGP 74
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.5
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Frame = +1
Query: 199 KPAVTVSLSTPQIPNXXXXXXXXXXXLSAERGHSSSPQSPLPTVRDCTA---SSLMKXXX 369
+P +V+ S+ +P+ +S+ +SSPQS L T + + S+L+
Sbjct: 458 QPTASVASSSVSVPSSSSVQPQSSTPISSSSS-ASSPQSTLSTSSEVVSEVSSTLLSGSS 516
Query: 370 XXXXXXXXXKPPAIXAAP---------DLPTTXSPASACGLIRFRS--AKTNXXQTDSAA 516
+I ++P +PT+ S + + S + ++ T S+
Sbjct: 517 AIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576
Query: 517 RPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPTALVTAXTPKT 693
+ S T + S +L I+ ++TS + + AST +PS S + + ++++ TP T
Sbjct: 577 SSILSSSTSSPSSTSL--SISSSSTSSTFS-SASTSSPSSISSSISSSSTILSSPTPST 632
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 508 SAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPTA 666
S+ RP S A S T P A + T VS + AST +EP ++ TP++
Sbjct: 310 SSTRPS--SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 613 ASTVAPSEPFSRSETPTA 666
AS+ PSE SR+ETPTA
Sbjct: 495 ASSPNPSETNSRAETPTA 512
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 276 RCEGSRSSRSS-IWNLWRRKRDRYRRFSVRLHR 181
RC+G +S + I++ WR D YR SV L R
Sbjct: 401 RCQGHKSWVTDVIFDAWRCDDDNYRIASVGLDR 433
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 348 FPDENKCDVFWNCW 389
F D N D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,838
Number of Sequences: 5004
Number of extensions: 50401
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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