BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0602 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.052 SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.48 SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.85 SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.1 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 2.0 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0 SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 26 4.5 SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 4.5 SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 4.5 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.5 SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.0 SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 7.9 SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 7.9 SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 7.9 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 32.7 bits (71), Expect = 0.052 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1 Query: 502 TDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPT 663 T S P + S + S + P +A++T+S + AST A + SRS PT Sbjct: 299 TTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT 352 >SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 565 Score = 29.5 bits (63), Expect = 0.48 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +1 Query: 520 PPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPTALVTAXTP 687 P +RS +L S V LIP + + + S + PAS P S S + + V + P Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP 494 >SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 28.7 bits (61), Expect = 0.85 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%) Frame = +1 Query: 502 TDSAARPPVRSPTLARSVVT---LIPKIAVNTTSV-------SXALPASTVAPSEPFSRS 651 TD PP S T + S +T +IP + TT+ S LP+S ++ + S S Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSS 243 Query: 652 ETPTALVTA-XTPKT 693 PT+++T+ TP T Sbjct: 244 VLPTSIITSTSTPVT 258 >SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 782 Score = 28.3 bits (60), Expect = 1.1 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +3 Query: 150 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 275 + CD+ W C+N G+ L C NG+ +D K L D L N Sbjct: 30 LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 27.5 bits (58), Expect = 2.0 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +1 Query: 499 QTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFS 645 Q SA P R + + T P +TS AST++PS PFS Sbjct: 348 QNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 27.5 bits (58), Expect = 2.0 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Frame = +1 Query: 400 PPAIXAAPDLPTTXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVT---LIP 570 P + + P +T +P S F + T+ T SA+ P S + S T Sbjct: 632 PTSSASTPLSNSTVAPTSTFTSSGFNT--TSGLPTSSASTPSSNSSIVPTSTFTSSGFNT 689 Query: 571 KIAVNTTSVSXALPASTVAPSEPFSRS 651 + T+S S L STVAP+ F+ S Sbjct: 690 TSGLPTSSASTPLSNSTVAPTSTFTSS 716 >SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 245 Score = 26.2 bits (55), Expect = 4.5 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 614 AGNAXETDVVFTAIFGMSVTTERASVGDLTGGRAAESVCXL 492 A NA T V A G+ + TE+ +L G + E VC + Sbjct: 27 AVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67 >SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 459 Score = 26.2 bits (55), Expect = 4.5 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +3 Query: 174 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 284 C N V LK NG + S+ L+E C Y N C Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409 >SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 447 Score = 26.2 bits (55), Expect = 4.5 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 679 SQLPVPSXSPILKTVPMGQP 620 ++LPVPS +PIL T P+ P Sbjct: 55 NKLPVPSTNPILTTEPIVGP 74 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 26.2 bits (55), Expect = 4.5 Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 14/179 (7%) Frame = +1 Query: 199 KPAVTVSLSTPQIPNXXXXXXXXXXXLSAERGHSSSPQSPLPTVRDCTA---SSLMKXXX 369 +P +V+ S+ +P+ +S+ +SSPQS L T + + S+L+ Sbjct: 458 QPTASVASSSVSVPSSSSVQPQSSTPISSSSS-ASSPQSTLSTSSEVVSEVSSTLLSGSS 516 Query: 370 XXXXXXXXXKPPAIXAAP---------DLPTTXSPASACGLIRFRS--AKTNXXQTDSAA 516 +I ++P +PT+ S + + S + ++ T S+ Sbjct: 517 AIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576 Query: 517 RPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPTALVTAXTPKT 693 + S T + S +L I+ ++TS + + AST +PS S + + ++++ TP T Sbjct: 577 SSILSSSTSSPSSTSL--SISSSSTSSTFS-SASTSSPSSISSSISSSSTILSSPTPST 632 >SPBC947.01 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 25.8 bits (54), Expect = 6.0 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = +1 Query: 508 SAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSETPTA 666 S+ RP S A S T P A + T VS + AST +EP ++ TP++ Sbjct: 310 SSTRPS--SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359 >SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual Length = 1403 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 613 ASTVAPSEPFSRSETPTA 666 AS+ PSE SR+ETPTA Sbjct: 495 ASSPNPSETNSRAETPTA 512 >SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 543 Score = 25.4 bits (53), Expect = 7.9 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -2 Query: 276 RCEGSRSSRSS-IWNLWRRKRDRYRRFSVRLHR 181 RC+G +S + I++ WR D YR SV L R Sbjct: 401 RCQGHKSWVTDVIFDAWRCDDDNYRIASVGLDR 433 >SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 472 Score = 25.4 bits (53), Expect = 7.9 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +3 Query: 348 FPDENKCDVFWNCW 389 F D N D +WNCW Sbjct: 350 FADRNFYDDWWNCW 363 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,577,838 Number of Sequences: 5004 Number of extensions: 50401 Number of successful extensions: 197 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 197 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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