Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0602
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    35   0.054
03_05_1129 - 30595580-30595771,30596119-30597162                       32   0.50 
12_02_0589 + 20850249-20850491,20850583-20851839                       31   0.88 
04_04_0248 - 23891684-23892064                                         31   1.2  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    31   1.2  
04_01_0615 - 8060085-8060972                                           30   1.5  
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076...    29   3.5  
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918     29   3.5  
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779...    29   4.7  
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88...    29   4.7  

>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 436 TXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVV---TLIPKIAVNTTSVSXA 606
           T  P     + R    K +  QT +A +PP+R    A + +   T +P +  N +SVS  
Sbjct: 261 TSPPHKNSHIPRALPPKESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHD 320

Query: 607 LPASTVAPSEPFSRS 651
            P STVA  +P + S
Sbjct: 321 RPPSTVAAPKPATSS 335


>03_05_1129 - 30595580-30595771,30596119-30597162
          Length = 411

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 442 SPASACGLIRFRSAKTNXXQTDSA-ARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPAS 618
           SP+ A  L   R + T   + + A A PP  S   AR VVTL P+      +   A   S
Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASPS 234

Query: 619 TVAPSEPFS---RSETPTA 666
            VA S   S   R  TP A
Sbjct: 235 PVALSAAVSTHLRVSTPDA 253


>12_02_0589 + 20850249-20850491,20850583-20851839
          Length = 499

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 300 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 163
           A SSL T     S S R ++  +WR+ R+ +R+FS   ++C  +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313


>04_04_0248 - 23891684-23892064
          Length = 126

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/82 (28%), Positives = 32/82 (39%)
 Frame = +1

Query: 454 ACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPS 633
           A    RFRSA     +   AA    R    A + + L+P  A   T+     PA+  AP 
Sbjct: 39  AAAATRFRSAAAAASRMRLAAAAATRMRPAAAAAMPLLPSAA---TAARMWPPAAKAAPM 95

Query: 634 EPFSRSETPTALVTAXTPKTFP 699
            P + +  P    TA   +  P
Sbjct: 96  HPAAATAAPLQSATASVVRMCP 117


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 20  TLVPGLISQYEFEVFISVSGRPR--RSCRPRVLQMPRRLRFLPSPHLL 157
           TL+  L S   F+    ++GR      C PR  + PR L +L SPH+L
Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371


>04_01_0615 - 8060085-8060972
          Length = 295

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = +1

Query: 403 PAIXAAPDLPTTXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIAV 582
           P   A P LP++   A+    +   S+           +P V +P+   S  +    +  
Sbjct: 70  PLATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLP 129

Query: 583 NTTSVSXALPASTVAPSEP 639
             T+V  ALP +   PS+P
Sbjct: 130 CLTTVGPALPGAPSTPSQP 148


>04_04_1499 -
           34006999-34007232,34007371-34007440,34007580-34007637,
           34007940-34007979,34008183-34008259,34008366-34008582,
           34008703-34009266
          Length = 419

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 279 ECGERTQLEPPISTPHCSRLYGIF 350
           + GERT L PP    H  R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167


>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
          Length = 250

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -2

Query: 321 EWRLGARAVSSLRTQRC---EGSRSSRSSIWNLWR 226
           +WR   R    LR+QRC   EG RS    +  +WR
Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190


>11_06_0578 +
           25176304-25176388,25176503-25177032,25177267-25177997,
           25178122-25178172,25178562-25178813,25178894-25179004,
           25179102-25179183,25179460-25179489
          Length = 623

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -1

Query: 664 PSXSPILKTVPMGQPYSRATPSRQM*YLRQSSG*A*RLNEPALETSPGAGQPNPFAXYSF 485
           P+  P+L+++P  QP    +PS+Q          A   + P    SPG+   +  + Y+ 
Sbjct: 379 PASPPLLRSLPH-QPTPPPSPSQQPTLPAPQPVQASPTSPPKQHASPGSALSSSLSTYTP 437

Query: 484 LHSGT*SAH 458
           + SG  SAH
Sbjct: 438 ICSGRTSAH 446


>11_01_0113 +
           881806-881996,882831-882921,883140-883255,884489-885260
          Length = 389

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 285 RTQRCEGSRSSRSSIWNLWRRKRDR 211
           R  RC G  ++RS+   LWRR+R R
Sbjct: 20  RVSRCSGRPATRSAPSILWRRRRPR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,952
Number of Sequences: 37544
Number of extensions: 393375
Number of successful extensions: 1380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)