BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0602 (700 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 35 0.054 03_05_1129 - 30595580-30595771,30596119-30597162 32 0.50 12_02_0589 + 20850249-20850491,20850583-20851839 31 0.88 04_04_0248 - 23891684-23892064 31 1.2 01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 31 1.2 04_01_0615 - 8060085-8060972 30 1.5 04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 3.5 01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 29 3.5 11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 29 4.7 11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.7 >01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917, 5111390-5111668,5111886-5112257,5112371-5112475, 5112832-5112909,5112990-5113199,5113287-5113406, 5113508-5113606,5113685-5113750,5113914-5114141, 5114216-5114521,5115324-5115381 Length = 1066 Score = 35.1 bits (77), Expect = 0.054 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +1 Query: 436 TXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVV---TLIPKIAVNTTSVSXA 606 T P + R K + QT +A +PP+R A + + T +P + N +SVS Sbjct: 261 TSPPHKNSHIPRALPPKESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHD 320 Query: 607 LPASTVAPSEPFSRS 651 P STVA +P + S Sbjct: 321 RPPSTVAAPKPATSS 335 >03_05_1129 - 30595580-30595771,30596119-30597162 Length = 411 Score = 31.9 bits (69), Expect = 0.50 Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Frame = +1 Query: 442 SPASACGLIRFRSAKTNXXQTDSA-ARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPAS 618 SP+ A L R + T + + A A PP S AR VVTL P+ + A S Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASPS 234 Query: 619 TVAPSEPFS---RSETPTA 666 VA S S R TP A Sbjct: 235 PVALSAAVSTHLRVSTPDA 253 >12_02_0589 + 20850249-20850491,20850583-20851839 Length = 499 Score = 31.1 bits (67), Expect = 0.88 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -2 Query: 300 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 163 A SSL T S S R ++ +WR+ R+ +R+FS ++C +S+ Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313 >04_04_0248 - 23891684-23892064 Length = 126 Score = 30.7 bits (66), Expect = 1.2 Identities = 23/82 (28%), Positives = 32/82 (39%) Frame = +1 Query: 454 ACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPS 633 A RFRSA + AA R A + + L+P A T+ PA+ AP Sbjct: 39 AAAATRFRSAAAAASRMRLAAAAATRMRPAAAAAMPLLPSAA---TAARMWPPAAKAAPM 95 Query: 634 EPFSRSETPTALVTAXTPKTFP 699 P + + P TA + P Sbjct: 96 HPAAATAAPLQSATASVVRMCP 117 >01_06_0795 - 32051794-32053362,32053452-32053595,32054102-32054965, 32055335-32055892 Length = 1044 Score = 30.7 bits (66), Expect = 1.2 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +2 Query: 20 TLVPGLISQYEFEVFISVSGRPR--RSCRPRVLQMPRRLRFLPSPHLL 157 TL+ L S F+ ++GR C PR + PR L +L SPH+L Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371 >04_01_0615 - 8060085-8060972 Length = 295 Score = 30.3 bits (65), Expect = 1.5 Identities = 19/79 (24%), Positives = 32/79 (40%) Frame = +1 Query: 403 PAIXAAPDLPTTXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIAV 582 P A P LP++ A+ + S+ +P V +P+ S + + Sbjct: 70 PLATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLP 129 Query: 583 NTTSVSXALPASTVAPSEP 639 T+V ALP + PS+P Sbjct: 130 CLTTVGPALPGAPSTPSQP 148 >04_04_1499 - 34006999-34007232,34007371-34007440,34007580-34007637, 34007940-34007979,34008183-34008259,34008366-34008582, 34008703-34009266 Length = 419 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 279 ECGERTQLEPPISTPHCSRLYGIF 350 + GERT L PP H R++G+F Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167 >01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 Length = 250 Score = 29.1 bits (62), Expect = 3.5 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = -2 Query: 321 EWRLGARAVSSLRTQRC---EGSRSSRSSIWNLWR 226 +WR R LR+QRC EG RS + +WR Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190 >11_06_0578 + 25176304-25176388,25176503-25177032,25177267-25177997, 25178122-25178172,25178562-25178813,25178894-25179004, 25179102-25179183,25179460-25179489 Length = 623 Score = 28.7 bits (61), Expect = 4.7 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = -1 Query: 664 PSXSPILKTVPMGQPYSRATPSRQM*YLRQSSG*A*RLNEPALETSPGAGQPNPFAXYSF 485 P+ P+L+++P QP +PS+Q A + P SPG+ + + Y+ Sbjct: 379 PASPPLLRSLPH-QPTPPPSPSQQPTLPAPQPVQASPTSPPKQHASPGSALSSSLSTYTP 437 Query: 484 LHSGT*SAH 458 + SG SAH Sbjct: 438 ICSGRTSAH 446 >11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-885260 Length = 389 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -2 Query: 285 RTQRCEGSRSSRSSIWNLWRRKRDR 211 R RC G ++RS+ LWRR+R R Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,405,952 Number of Sequences: 37544 Number of extensions: 393375 Number of successful extensions: 1380 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1379 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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